Browse Element(s) Details


OsAffx.30123.1.S1_at

Description tigr:9637.m02862
TID=OsAffx.30123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3263011/11hypothetical protein
LOC_Os06g494103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30123.1.S1_at--807--3231Chr09:19466673..19466697 (25 bp)
CAAGCGTTGTTCCTAGGGAGAACCT
LOC_Os09g32630
OsAffx.30123.1.S1_at--435--1071Chr09:19466659..19466683 (25 bp)
AGGGAGAACCTGGTTCCAGTCTGCC
LOC_Os09g32630
OsAffx.30123.1.S1_at--1099--9371Chr09:19466608..19466632 (25 bp)
TCGATGCCGGTACTTCGTCTGGTTA
LOC_Os09g32630
OsAffx.30123.1.S1_at--1008--2051Chr09:19466597..19466621 (25 bp)
ACTTCGTCTGGTTAGTGGTGCTTAA
LOC_Os09g32630
OsAffx.30123.1.S1_at--578--3652Chr06:29937482..29937506 (25 bp)
CTTAACAGGTGCTGGACGGGTGATC
LOC_Os06g49410
OsAffx.30123.1.S1_at--978--511Chr09:19466522..19466546 (25 bp)
ATCGATGTGTCCTCTGCGATCAATG
LOC_Os09g32630
OsAffx.30123.1.S1_at--944--1331Chr09:19466461..19466485 (25 bp)
AGAGTCCCGCCAACTGTGGTGGATG
LOC_Os09g32630
OsAffx.30123.1.S1_at--385--8252Chr06:29937622..29937646 (25 bp)
GGCACTGAGGGCCATTGGACAAACA
LOC_Os06g49410
OsAffx.30123.1.S1_at--131--10872Chr06:29937636..29937659 (24 bp)
TTGGACAAACAAGTTCTCTGCCGAT
LOC_Os06g49410
OsAffx.30123.1.S1_at--15--9491Chr09:19466407..19466431 (25 bp)
TCTGCCGATGAACGAAGTCTCCTTC
LOC_Os09g32630
OsAffx.30123.1.S1_at--775--2531Chr09:19466314..19466338 (25 bp)
AACTCTCATTGCCTGGACGATCTGG
LOC_Os09g32630
Target Sequence 
CAAGCGTTGTTCCTAGGGAGAACCTGGTTCCAGTCTGCCCCGATCTGGAAATCTCTCACTCCACCTCGATGCCGGTACTT
CGTCTGGTTAGTGGTGCTTAACAGGTGCTGGACGGGTGATCGATTGAGGAGGCGCGGGCTGCCACACCCCGATCGATGTG
TCCTCTGCGATCAATGCGATGAAATCATCGATTATCTCCTGGTCGCTTGCCCAGAGTCCCGCCAACTGTGGTGGATGGCA
CTGAGGGCCATTGGACAAACAAGTTCTCTGCCGATGAACGAAGTCTCCTTCCACCTCTGGCTTTGCGATAGCCGAAAGAG
ATTGACCAAGGCAGCTCGGCATGGTTTCGACACCATCGCAACTCTCATTGCCTGGACGATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis