Browse Element(s) Details


OsAffx.30364.1.S1_x_at

Description tigr:9638.m00864
TID=OsAffx.30364.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0991011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09880Os.40855.2.S1_x_at3/1110+5117300..5119003hypothetical protein
LOC_Os10g09890OsAffx.20677.1.S1_at11/1110+5126814..5127359hypothetical protein
LOC_Os10g09900OsAffx.20676.1.S1_at11/1110+5128002..5131279transposon protein, putative, Mutator sub-class
LOC_Os10g09910OsAffx.30364.1.S1_x_at11/1110+5131494..5132315hypothetical protein
LOC_Os10g09920OsAffx.30365.1.S1_at11/1110+5135311..5135697Protease inhibitor/seed storage/LTP family protein
LOC_Os10g09930Os.8253.1.S1_at10/1110+5145817..5146916expressed protein
LOC_Os10g09940NANA10+5151577..5155321retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30364.1.S1_x_at--954--1971Chr10:5131806..5131830 (25 bp)
ACTCGTACGGACTACAGCCTCGCGG
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--117--9411Chr10:5131843..5131867 (25 bp)
TCGTCACCGTGCTCCGGCGGCGTTT
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--41--10631Chr10:5131866..5131890 (25 bp)
TTCGAGGAGAACGACGCGGTGCTCT
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--880--2591Chr10:5131875..5131899 (25 bp)
AACGACGCGGTGCTCTGCAGCGGGA
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--103--9871Chr10:5131935..5131959 (25 bp)
TACACCCTCTCCCTCGAGGTGTGGG
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--130--7631Chr10:5132040..5132064 (25 bp)
GGGACAAGCTATCCGGCCCGGCAGG
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--686--1291Chr10:5132119..5132143 (25 bp)
AGATGCGCGTGCAGTACCCGAGGCT
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--1157--5091Chr10:5132175..5132199 (25 bp)
GCACTCGAGGGCGTCAGCGACATGA
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--350--9351Chr10:5132208..5132232 (25 bp)
TCGCTGGAGCTGAGGCTGCAGAACC
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--619--9031Chr10:5132224..5132248 (25 bp)
TGCAGAACCAGCAGCTCGCCGGTGG
LOC_Os10g09910
OsAffx.30364.1.S1_x_at--690--891Chr10:5132257..5132281 (25 bp)
AGGCGCGCACCGATGACCGGGCGAA
LOC_Os10g09910
Target Sequence 
ACTCGTACGGACTACAGCCTCGCGGAGCTCGAGGGGCTCGTCACCGTGCTCCGGCGGCGTTTCGAGGAGAACGACGCGGT
GCTCTGCAGCGGGAGCGGCGGCCCTGCTCCGGGGCACCAGCTCCGGCTCTACACCCTCTCCCTCGAGGTGTGGGGCGCCG
CTCCGACGGCCGTCGCGCCGCCCAAACCCGCCGCCGCGGCCACACCCACCACGGCGCCCGCCAAGAACGCGCCGGGGACA
AGCTATCCGGCCCGGCAGGCGGGCCGCCCCCGCCAAGCGGCGGCGCCGCCGGCTAAGAAGGTGCGGTACGAGGAGATGCG
CGTGCAGTACCCGAGGCTGGCGGCGAAGGTGGACGAGATGGCGAGGAAGGCACTCGAGGGCGTCAGCGACATGACGGCGT
GGTCGCTGGAGCTGAGGCTGCAGAACCAGCAGCTCGCCGGTGGCACGCCGGAGGCGCGCACCGATGACCGGGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30364.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis