Browse Element(s) Details


OsAffx.30365.1.S1_at

Description tigr:9638.m00865
TID=OsAffx.30365.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0992011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09880Os.40855.2.S1_x_at3/1110+5117300..5119003hypothetical protein
LOC_Os10g09890OsAffx.20677.1.S1_at11/1110+5126814..5127359hypothetical protein
LOC_Os10g09900OsAffx.20676.1.S1_at11/1110+5128002..5131279transposon protein, putative, Mutator sub-class
LOC_Os10g09910OsAffx.30364.1.S1_x_at11/1110+5131494..5132315hypothetical protein
LOC_Os10g09920OsAffx.30365.1.S1_at11/1110+5135311..5135697Protease inhibitor/seed storage/LTP family protein
LOC_Os10g09930Os.8253.1.S1_at10/1110+5145817..5146916expressed protein
LOC_Os10g09940NANA10+5151577..5155321retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30365.1.S1_at--1052--631Chr10:5135353..5135377 (25 bp)
ATGAGCCTTCTCTCAGTGGAGGTCG
LOC_Os10g09920
OsAffx.30365.1.S1_at--368--4731Chr10:5135384..5135408 (25 bp)
GCTGTGGTGACACGAGCTGCTCAAA
LOC_Os10g09920
OsAffx.30365.1.S1_at--535--371Chr10:5135464..5135488 (25 bp)
ATCAATGTGCTTAACCTTGCGGTGT
LOC_Os10g09920
OsAffx.30365.1.S1_at--679--7291Chr10:5135487..5135511 (25 bp)
GTGCGCTAACGTGCTCAGCTTAAAT
LOC_Os10g09920
OsAffx.30365.1.S1_at--442--1551Chr10:5135503..5135527 (25 bp)
AGCTTAAATGTTCCTTCCTCGCAGT
LOC_Os10g09920
OsAffx.30365.1.S1_at--672--1131Chr10:5135525..5135549 (25 bp)
AGTGCTGCACACTGCTTCAAGGGCT
LOC_Os10g09920
OsAffx.30365.1.S1_at--374--9731Chr10:5135541..5135565 (25 bp)
TCAAGGGCTCGCTGACCTGGATGCA
LOC_Os10g09920
OsAffx.30365.1.S1_at--1131--4291Chr10:5135574..5135598 (25 bp)
CCTATGCGCTGCTCTTAAGGCGAAT
LOC_Os10g09920
OsAffx.30365.1.S1_at--82--891Chr10:5135591..5135615 (25 bp)
AGGCGAATATCCTTGGTGTTATCAA
LOC_Os10g09920
OsAffx.30365.1.S1_at--1079--5751Chr10:5135620..5135644 (25 bp)
GACGTTCTAGTTGATGTCACTCTCA
LOC_Os10g09920
OsAffx.30365.1.S1_at--1076--7091Chr10:5135635..5135659 (25 bp)
GTCACTCTCATTCTTAACTCATGCA
LOC_Os10g09920
Target Sequence 
ATGAGCCTTCTCTCAGTGGAGGTCGCCAATGGCTGTGGTGACACGAGCTGCTCAAACCCATCCCCACCACCGCCGCCCGC
TGTGCCAACACCAACAGGGGGTACATGCCCCATCAATGTGCTTAACCTTGCGGTGTGCGCTAACGTGCTCAGCTTAAATG
TTCCTTCCTCGCAGTGCTGCACACTGCTTCAAGGGCTCGCTGACCTGGATGCAGCGCTTTGCCTATGCGCTGCTCTTAAG
GCGAATATCCTTGGTGTTATCAACGTAGACGTTCTAGTTGATGTCACTCTCATTCTTAACTCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis