Browse Element(s) Details


OsAffx.30543.3.S1_at

Description tigr:9637.m02082
TID=OsAffx.30543.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g243109/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24270NANA9+14418039..14420842retrotransposon protein, putative, unclassified
LOC_Os09g24280OsAffx.29996.1.S1_at10/119+14423811..14425809hypothetical protein
LOC_Os09g24290OsAffx.30543.2.S1_x_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24290OsAffx.30543.2.S1_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24300NANA9+14440360..14440806hypothetical protein
LOC_Os09g24310OsAffx.30543.2.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.3.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.2.S1_x_at3/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24320Os.27516.1.A1_at11/119+14453727..144564542-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os09g24330NANA9+14462612..14463476protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_x_at11/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_at10/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24350Os.55213.1.S1_at10/119+14472051..14473027expressed protein
LOC_Os09g24359NANA9+14477208..14477505NA
LOC_Os09g24370OsAffx.17872.1.S1_s_at11/119+14478027..14478829expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30543.3.S1_at--707--7731Chr09:14450701..14450725 (25 bp)
GGTGTTATTCCATAGGGATCAACTG
LOC_Os09g24310
OsAffx.30543.3.S1_at--2--2971Chr09:14450754..14450778 (25 bp)
AATGGAAGGCTTTTGCTCACCGGGA
LOC_Os09g24310
OsAffx.30543.3.S1_at--418--4831Chr09:14450768..14450792 (25 bp)
GCTCACCGGGAAGATCTCAGAATAA
LOC_Os09g24310
OsAffx.30543.3.S1_at--951--5231Chr09:14450787..14450811 (25 bp)
GAATAAGTCATTACTGCACAAGAAG
LOC_Os09g24310
OsAffx.30543.3.S1_at--761--1051NONE
AGGGTTAAACTCTACTACATGACGC
NONE
OsAffx.30543.3.S1_at--377--9871Chr09:14452463..14452487 (25 bp)
TACATGACGCTCAGGATGAACATCG
LOC_Os09g24310
OsAffx.30543.3.S1_at--611--671Chr09:14452478..14452502 (25 bp)
ATGAACATCGACTGCAACGGGTGCT
LOC_Os09g24310
OsAffx.30543.3.S1_at--70--1971Chr09:14452488..14452512 (25 bp)
ACTGCAACGGGTGCTACCACAAGAT
LOC_Os09g24310
OsAffx.30543.3.S1_at--504--1711Chr09:14452503..14452527 (25 bp)
ACCACAAGATCAGGAGGGCGCTGCT
LOC_Os09g24310
OsAffx.30543.3.S1_at--401--8551Chr09:14452841..14452865 (25 bp)
TGGAGAGCCACCTGATCGACAGGAA
LOC_Os09g24310
OsAffx.30543.3.S1_at--1012--3991Chr09:14452944..14453177 (25 bp)
CGTCGAGATCCTCGAGCGTTTATCA
NONE
Target Sequence 
GGTGTTATTCCATAGGGATCAACTGAGGCATTCACTCGAGTGGATCGATAGCAAATGGAAGGCTTTTGCTCACCGGGAAG
ATCTCAGAATAAGTCATTACTGCACAAGAAGTTCCTACAAGAGAAGAAGTAATGAGGCAAATGGAAGGCCTTCAAACAAA
CAAAGGGTTAAACTCTACTACATGACGCTCAGGATGAACATCGACTGCAACGGGTGCTACCACAAGATCAGGAGGGCGCT
GCTCCAGATGCAAGAGCTGGAGAGCCACCTGATCGACAGGAAGCACGGCAGGGTGAGCGTGTTCGGGGCCTTCAGCCCGC
AGGACGTGGCGATCAAGATCAGGAAGCGGACCAACCGCCGCGTCGAGATCCTCGAGCGTTTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30543.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis