Browse Element(s) Details


OsAffx.30567.1.S1_at

Description tigr:9638.m02388
TID=OsAffx.30567.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2826010/11hypothetical protein
LOC_Os08g058801/11U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28230Os.2344.1.S1_at10/1110+14348672..14349971Histone H2A variant, putative, expressed
LOC_Os10g28240Os.46832.1.S1_at11/1110+14352601..14355971Calcium-transporting ATPase 13, plasma membrane-type, putative, expressed
LOC_Os10g28250OsAffx.25007.2.S1_s_at9/1110+14357843..14359102retrotransposon protein, putative, LINE subclass
LOC_Os10g28260OsAffx.30567.1.S1_at10/1110+14372648..14373672hypothetical protein
LOC_Os10g28280OsAffx.6790.1.S1_at11/1110+14378077..14380116hypothetical protein
LOC_Os10g28280Os.50619.1.S1_at1/1110+14378077..14380116hypothetical protein
LOC_Os10g28280Os.50619.1.S1_x_at1/1110+14378077..14380116hypothetical protein
LOC_Os10g28290OsAffx.8122.1.S1_at10/1110+14381545..14383708expressed protein
LOC_Os10g28310NANA10+14396428..14401263retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006364biological_processrRNA processing
GO:0005730cellular_componentnucleolus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0015030cellular_componentCajal body
GO:0016363cellular_componentnuclear matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30567.1.S1_at--163--8611NONE
TGGGTGGTGTTTTTAACCTGACTCT
NONE
OsAffx.30567.1.S1_at--738--7491Chr10:14373398..14373419 (22 bp)
GTGGTGTTTTTAACCTGACTCTGGC
LOC_Os10g28260
OsAffx.30567.1.S1_at--785--7411Chr10:14373398..14373422 (25 bp)
GTGTTTTTAACCTGACTCTGGCAAG
LOC_Os10g28260
OsAffx.30567.1.S1_at--878--6811Chr10:14373400..14373424 (25 bp)
GTTTTTAACCTGACTCTGGCAAGAG
LOC_Os10g28260
OsAffx.30567.1.S1_at--125--9811Chr10:14373405..14373429 (25 bp)
TAACCTGACTCTGGCAAGAGATATC
LOC_Os10g28260
OsAffx.30567.1.S1_at--709--1991Chr10:14373412..14373436 (25 bp)
ACTCTGGCAAGAGATATCAAGCATC
LOC_Os10g28260
OsAffx.30567.1.S1_at--542--6471Chr10:14373424..14373448 (25 bp)
GATATCAAGCATCTTTTAGGAGGTT
LOC_Os10g28260
OsAffx.30567.1.S1_at--631--372Chr10:14373427..14373451 (25 bp)
ATCAAGCATCTTTTAGGAGGTTGGC
LOC_Os10g28260
OsAffx.30567.1.S1_at--1141--1531Chr10:14373431..14373455 (25 bp)
AGCATCTTTTAGGAGGTTGGCTTTG
LOC_Os10g28260
OsAffx.30567.1.S1_at--712--7911Chr10:14373445..14373469 (25 bp)
GGTTGGCTTTGTGATTTAATAAAGA
LOC_Os10g28260
OsAffx.30567.1.S1_at--817--2411Chr10:14373622..14373642 (21 bp)
AAAAAGAGATCGGAGGACGCACAAG
LOC_Os10g28260
Target Sequence 
TGGGTGGTGTTTTTAACCTGACTCTGGCAAGAGATATCAAGCATCTTTTAGGAGGTTGGCTTTGTGATTTAATAAAGAAG
ATAAAAAGAGATCGGAGGACGCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis