Browse Element(s) Details


OsAffx.3059.1.S1_at

Description tigr:9630.m05336
TID=OsAffx.3059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Subtilase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5391011/11Subtilase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53850OsAffx.12631.1.S1_at11/112+32975405..32977751Subtilisin N-terminal Region family protein
LOC_Os02g53860Os.18825.1.S1_at11/112+32979233..32981976subtilase family protein, putative, expressed
LOC_Os02g53870Os.51349.1.S1_at11/112+32985610..32986341expressed protein
LOC_Os02g53870Os.55356.1.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53870Os.35710.2.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53880NANA2+32987710..32987913hypothetical protein
LOC_Os02g53890NANA2+32989888..32990268hypothetical protein
LOC_Os02g53900OsAffx.24858.1.S1_at11/112+32998380..32998763hypothetical protein
LOC_Os02g53910OsAffx.3059.1.S1_at11/112+33002645..33004717Subtilase family protein
LOC_Os02g53920NANA2+33007491..33008047retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53930Os.47463.1.S1_x_at6/112+33009988..33012249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53930Os.14491.2.S1_x_at5/112+33009988..33012249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53940NANA2+33014746..33018077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53950OsAffx.24859.1.S1_at11/112+33028536..33029978hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3059.1.S1_at--1125--5771Chr02:33003188..33003212 (25 bp)
GACGACGGCCTACAATGTGGACAAT
LOC_Os02g53910
OsAffx.3059.1.S1_at--357--6711Chr02:33003116..33003140 (25 bp)
GTTCGAGCTTGGGTCTGGCCACGTC
LOC_Os02g53910
OsAffx.3059.1.S1_at--454--7291Chr02:33003081..33003105 (25 bp)
GTGCCCTCGACCCTGGATTGGTGAA
LOC_Os02g53910
OsAffx.3059.1.S1_at--37--4051Chr02:33003041..33003065 (25 bp)
CGATTACATAACATTCCTCTGCAGC
LOC_Os02g53910
OsAffx.3059.1.S1_at--1085--9031Chr02:33003022..33003046 (25 bp)
TGCAGCCTCGGCTACAACAGTAGTC
LOC_Os02g53910
OsAffx.3059.1.S1_at--459--2491Chr02:33003007..33003031 (25 bp)
AACAGTAGTCAGATCGCGCTCTTCA
LOC_Os02g53910
OsAffx.3059.1.S1_at--604--531Chr02:33002995..33003019 (25 bp)
ATCGCGCTCTTCACAAATGACGGTT
LOC_Os02g53910
OsAffx.3059.1.S1_at--199--691Chr02:33002979..33003003 (25 bp)
ATGACGGTTCGACGACAGACTGCTC
LOC_Os02g53910
OsAffx.3059.1.S1_at--634--7572Chr08:6309017..6309343 (25 bp)
GGGCGAACACCAATGTCATGTACAA
NONE
OsAffx.3059.1.S1_at--377--7111Chr02:33002833..33002857 (25 bp)
GTCATGTACAACGTTACCATCACCG
LOC_Os02g53910
OsAffx.3059.1.S1_at--760--1631Chr02:33002754..33002778 (25 bp)
AGCGCAGAACGCTGGATTACTCCAT
LOC_Os02g53910
Target Sequence 
GACGACGGCCTACAATGTGGACAATGATGGCAATGCCATCAAGGACATGGCCACGGGCCAGGCAGCCAGGCCGTTCGAGC
TTGGGTCTGGCCACGTCGACCCCAACCGTGCCCTCGACCCTGGATTGGTGAACAACACCACCGCCGACGATTACATAACA
TTCCTCTGCAGCCTCGGCTACAACAGTAGTCAGATCGCGCTCTTCACAAATGACGGTTCGACGACAGACTGCTCGACCAG
GCCACGGAGGTCCGTGGGCGACCTCAACTACCCGGCGTTCTCGGTGGTGTTCGTGAGGTCCGGAGAGCAGGTCACGCAGC
GCCGCGCCGTGACCAACGTCGGGGCGAACACCAATGTCATGTACAACGTTACCATCACCGCACCGCCCGGCACCACTCTC
ACGGTGACGCCAACGAGGCTCGCGTTCGACGCGCAGCGCAGAACGCTGGATTACTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis