Browse Element(s) Details


OsAffx.30795.3.S1_at

Description tigr:9634.m01670
TID=OsAffx.30795.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1660011/11expressed protein
LOC_Os10g294504/11hypothetical protein
LOC_Os11g033604/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16570NANA6+9515662..9518868transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g16580Os.14491.2.S1_x_at4/116+9521337..9525055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16580Os.47463.1.S1_x_at3/116+9521337..9525055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16590OsAffx.27671.1.S1_at11/116+9530135..9530413hypothetical protein
LOC_Os06g16600OsAffx.30795.3.S1_at11/116+9542522..9543930expressed protein
LOC_Os06g16600OsAffx.30795.1.S1_x_at5/116+9542522..9543930expressed protein
LOC_Os06g16610OsAffx.15461.1.S1_at11/116+9549450..9549710hypothetical protein
LOC_Os06g16620OsAffx.5031.5.S1_x_at11/116+9551316..9551657hypothetical protein
LOC_Os06g16630NANA6+9553821..9554620hypothetical protein
LOC_Os06g16640Os.14411.1.S1_at11/116+9563129..9565963Carboxyl-terminal peptidase, putative, expressed
LOC_Os06g16640Os.9827.1.S1_at1/116+9563129..9565963Carboxyl-terminal peptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30795.3.S1_at--376--10111Chr06:9543098..9543122 (25 bp)
TATGTTGCCTGTCCGACAACAGATT
LOC_Os06g16600
OsAffx.30795.3.S1_at--221--8813Chr10:14971339..14971363 (25 bp)
TGTTGCCTGTCCGACAACAGATTGA
LOC_Os10g29450
OsAffx.30795.3.S1_at--855--9173Chr10:14971342..14971366 (25 bp)
TGCCTGTCCGACAACAGATTGATGA
LOC_Os10g29450
OsAffx.30795.3.S1_at--430--4473Chr10:14971343..14971367 (25 bp)
GCCTGTCCGACAACAGATTGATGAC
LOC_Os10g29450
OsAffx.30795.3.S1_at--491--8713Chr10:14971346..14971370 (25 bp)
TGTCCGACAACAGATTGATGACAAG
LOC_Os10g29450
OsAffx.30795.3.S1_at--460--6151Chr06:9542567..9542591 (25 bp)
GAGGTTATGCGCTCCGGCTGAAATT
LOC_Os06g16600
OsAffx.30795.3.S1_at--968--1011Chr06:9542566..9542590 (25 bp)
AGGTTATGCGCTCCGGCTGAAATTC
LOC_Os06g16600
OsAffx.30795.3.S1_at--461--10131Chr06:9542562..9542586 (25 bp)
TATGCGCTCCGGCTGAAATTCTAGA
LOC_Os06g16600
OsAffx.30795.3.S1_at--135--611Chr06:9542561..9542585 (25 bp)
ATGCGCTCCGGCTGAAATTCTAGAG
LOC_Os06g16600
OsAffx.30795.3.S1_at--834--4571Chr06:9542559..9542583 (25 bp)
GCGCTCCGGCTGAAATTCTAGAGCT
LOC_Os06g16600
OsAffx.30795.3.S1_at--500--3811Chr06:9542556..9542580 (25 bp)
CTCCGGCTGAAATTCTAGAGCTGTT
LOC_Os06g16600
Target Sequence 
TATGTTGCCTGTCCGACAACAGATTGATGACAAGAAGGGCAAGCGACCAATGTTTGAGGAACTGACAGAAAAAGTGCATG
CCAGTGCTGTGCAAATTGCTAAATGGGAACCTCCACCGGAAGGTGTGGCTAAGGTAAACATTGATGCTGGATTCAGGAAG
GAGACGGGTGATGCTTGTGCTGGAATAATTGTCAGAGATTGCTGGGGCCTGGTTCTTCTTGCAGCTTGTAAGAAGCTTCC
AAGATGCAGCTCTGCTACCCTGGCTGAAGCTTTGGCTTTCCTGGAGGGCGTTCGGTTGGCGATGAACTGGATACATATGC
CAATAATACTTGAATCTGACAATGCCGATGTCGTTGCTGGACTGAATATAACACAAGCGTCAAGAGCAGAATGGGGAGGT
ATAATTGCCGAGATAAGAGTGGCAATGCAATGCTTGCTGCAGGTGCAAGTGCATAAAGTGAAGAGAGATTCAAATAGGAT
AGCTCATATGTTAGCTCAGATGGTTATGACCTCAGGAGTTGAAGCGGAGTGGAGGTTATGCGCTCCGGCTGAAATTCTAG
AGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30795.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis