Browse Element(s) Details


Os.14411.1.S1_at

Description gb:CB655696
DB_XREF= gi:29659421
DB_XREF=OSJNEc09F15.r
CLONE=OSJNEc09F15
TID=Os.14411.1
CNT=9
FEA=EST
TIER=Stack
STK=6
UG=Os.14411 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200464.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1664011/11Carboxyl-terminal peptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16600OsAffx.30795.3.S1_at11/116+9542522..9543930expressed protein
LOC_Os06g16600OsAffx.30795.1.S1_x_at5/116+9542522..9543930expressed protein
LOC_Os06g16610OsAffx.15461.1.S1_at11/116+9549450..9549710hypothetical protein
LOC_Os06g16620OsAffx.5031.5.S1_x_at11/116+9551316..9551657hypothetical protein
LOC_Os06g16630NANA6+9553821..9554620hypothetical protein
LOC_Os06g16640Os.14411.1.S1_at11/116+9563129..9565963Carboxyl-terminal peptidase, putative, expressed
LOC_Os06g16640Os.9827.1.S1_at1/116+9563129..9565963Carboxyl-terminal peptidase, putative, expressed
LOC_Os06g16650OsAffx.15462.1.S1_at11/116+9572223..9572887hypothetical protein
LOC_Os06g16660Os.10827.1.S1_x_at8/116+9588785..9592072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16660Os.46055.2.S1_x_at5/116+9588785..9592072transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14411.1.S1_at--423--7351Chr06:9563593..9563617 (25 bp)
GTGAATTCGCCTCAAATTACCACAC
LOC_Os06g16640
Os.14411.1.S1_at--110--2171Chr06:9563572..9563596 (25 bp)
ACACCCATGGGTAGTGGACATTTTC
LOC_Os06g16640
Os.14411.1.S1_at--198--8291Chr06:9563461..9563485 (25 bp)
GGCTTGATAGCTCCGTTGCCCAGTT
LOC_Os06g16640
Os.14411.1.S1_at--365--6691Chr06:9563447..9563471 (25 bp)
GTTGCCCAGTTGCTATAACGTCATG
LOC_Os06g16640
Os.14411.1.S1_at--493--4531Chr06:9563444..9563468 (25 bp)
GCCCAGTTGCTATAACGTCATGACT
LOC_Os06g16640
Os.14411.1.S1_at--467--371Chr06:9563312..9563336 (25 bp)
ATCAAACTACCTACATCTCCTTAAT
LOC_Os06g16640
Os.14411.1.S1_at--513--1191Chr06:9563307..9563331 (25 bp)
ACTACCTACATCTCCTTAATAATTT
LOC_Os06g16640
Os.14411.1.S1_at--288--451Chr06:9563280..9563304 (25 bp)
ATCTAGTACTACATGCGCCCAATAA
LOC_Os06g16640
Os.14411.1.S1_at--1089--9771Chr06:9563271..9563295 (25 bp)
TACATGCGCCCAATAATAAAGTATT
LOC_Os06g16640
Os.14411.1.S1_at--706--3711Chr06:9563229..9563253 (25 bp)
CTAGCTAATAGTACATGTCTCATTT
LOC_Os06g16640
Os.14411.1.S1_at--122--7031Chr06:9563219..9563243 (25 bp)
GTACATGTCTCATTTCATGCTCTGG
LOC_Os06g16640
Target Sequence 
GTGAATTCGCCTCAAATTACCACACCCATGGGTAGTGGACATTTTCCTGAGGAAGGGTTCGGCAAGGCCACCTANAGCAG
AGCAATCCAAGTTGTTGATTCCTCCAACAATCTCAAACCACCAAATGGTGTGGGCTTGATAGCTCCGTTGCCCAGTTGCT
ATAACGTCATGACTGGTTCCTCCAGTACCACCAGTTGGGGCACTTACATCTACTATGGNGGGCCTGGGTGCCCTCAAANC
TCTCAAATTGAAGTGATGTAGAGANNGATCGATCGNGCTCGCCATCAAACTACCTACATCTCCTTAATAATTTNCATCTA
GTACTACATGCGCCCAATAATAAAGTATTATTAGCTNGGGTCTATACTAGCTAATAGTACATGTCTCATTTCATGCTCTG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis