Browse Element(s) Details


OsAffx.30808.2.S1_s_at

Description tigr:9640.m00306
TID=OsAffx.30808.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0389911/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed
LOC_Os12g03870NANA12+1593733..1599962major facilitator superfamily antiporter, putative
LOC_Os12g03880Os.25811.1.S1_at11/1112+1600954..160343260S acidic ribosomal protein P0, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.1.S1_a_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_s_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.3.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.27782.1.S1_at1/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03920OsAffx.30809.1.S1_x_at7/1112+1621020..1625198Nodulin, putative
LOC_Os12g03920Os.53105.1.S1_at5/1112+1621020..1625198Nodulin, putative
LOC_Os12g03930NANA12+1627755..1628672retrotransposon protein, putative, unclassified
LOC_Os12g03940OsAffx.19477.1.S1_at11/1112+1629993..1630617hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_s_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_at9/1112+1634122..1641673hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30808.2.S1_s_at--987--3171Chr12:1619268..1619292 (25 bp)
CAATACAAATGACTCAACCTCCTTG
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--921--3071Chr12:1619267..1619291 (25 bp)
AATACAAATGACTCAACCTCCTTGC
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--1112--311Chr12:1619266..1619290 (25 bp)
ATACAAATGACTCAACCTCCTTGCA
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--112--9851Chr12:1619265..1619289 (25 bp)
TACAAATGACTCAACCTCCTTGCAC
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--705--2191Chr12:1619264..1619288 (25 bp)
ACAAATGACTCAACCTCCTTGCACC
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--646--2271Chr12:1619262..1619286 (25 bp)
AAATGACTCAACCTCCTTGCACCGT
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--1070--2991Chr12:1619261..1619285 (25 bp)
AATGACTCAACCTCCTTGCACCGTT
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--341--671Chr12:1619260..1619284 (25 bp)
ATGACTCAACCTCCTTGCACCGTTT
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--187--8951Chr12:1619259..1619283 (25 bp)
TGACTCAACCTCCTTGCACCGTTTT
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--829--5691Chr12:1619258..1619282 (25 bp)
GACTCAACCTCCTTGCACCGTTTTC
LOC_Os12g03899
OsAffx.30808.2.S1_s_at--325--9711Chr12:1619255..1619279 (25 bp)
TCAACCTCCTTGCACCGTTTTCTGG
LOC_Os12g03899
Target Sequence 
CAATACAAATGACTCAACCTCCTTGCACCGTTTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30808.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis