Browse Element(s) Details


OsAffx.30811.2.S1_at

Description tigr:9639.m00340
TID=OsAffx.30811.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BC005559 RIKEN cDNA 2500002L14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0428011/11Zinc finger, C3HC4 type family protein
LOC_Os11g0428111/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04220Os.27960.1.S1_a_at10/1111+1717965..1734148HEAT repeat family protein, expressed
LOC_Os11g04230OsAffx.30810.1.S1_s_at1/1111+1737841..1740887transcription initiation factor IIE, putative
LOC_Os11g04240Os.48585.1.S1_at11/1111+1743100..1747825transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os11g04280OsAffx.30811.2.S1_at11/1111+1751235..1751891Zinc finger, C3HC4 type family protein
LOC_Os11g04270OsAffx.6990.1.S1_at9/1111+1752627..1754453hypothetical protein
LOC_Os11g04260OsAffx.6989.1.S1_at11/1111+1755947..1757800hypothetical protein
LOC_Os11g04267OsAffx.6989.1.S1_at11/1111+1767459..1769312hypothetical protein
LOC_Os11g04274OsAffx.6990.1.S1_at10/1111+1770806..1772632hypothetical protein
LOC_Os11g04281OsAffx.30811.2.S1_at11/1111+1773368..1774024Zinc finger, C3HC4 type family protein
LOC_Os11g04290Os.54318.1.S1_at11/1111+1774408..1776334Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30811.2.S1_at--388--10673Chr11:1773426..1773450 (25 bp)
TTCCTGATCCATACTCGGCAGAAAC
LOC_Os11g04281
OsAffx.30811.2.S1_at--70--9453Chr11:1773440..1773464 (25 bp)
TCGGCAGAAACATTTGAAGACCTAC
LOC_Os11g04281
OsAffx.30811.2.S1_at--148--3952Chr11:1773537..1773561 (25 bp)
CGGCAGCAGCACGAGTTCCAGTGAG
LOC_Os11g04281
OsAffx.30811.2.S1_at--70--1512Chr11:1773544..1773568 (25 bp)
AGCACGAGTTCCAGTGAGATTCCAC
LOC_Os11g04281
OsAffx.30811.2.S1_at--97--6072Chr11:1773635..1773659 (25 bp)
GAGTTCTATCGAGTGGTGTACCATG
LOC_Os11g04281
OsAffx.30811.2.S1_at--447--7433Chr12:1714425..1714858 (25 bp)
GTGTACTGGGCTGGCCGAGTCATCA
NONE
OsAffx.30811.2.S1_at--1151--6072Chr11:1773681..1773705 (25 bp)
GAGTCATCAGGCCTCGTCCTTCGTC
LOC_Os11g04281
OsAffx.30811.2.S1_at--259--592Chr11:1773707..1773731 (25 bp)
ATGCCAACGCCCGTGATAGGACGAC
LOC_Os11g04281
OsAffx.30811.2.S1_at--318--6332Chr11:1773760..1773784 (25 bp)
GATGCAGCCGCCGAGCAAGTACGCT
LOC_Os11g04281
OsAffx.30811.2.S1_at--1120--2832Chr11:1773776..1773800 (25 bp)
AAGTACGCTCGAGTACACGCCGTGT
LOC_Os11g04281
OsAffx.30811.2.S1_at--356--10872Chr11:1773949..1773973 (25 bp)
TTGGCTCAGGGATAGCTGCCTCTGC
LOC_Os11g04281
Target Sequence 
TTCCTGATCCATACTCGGCAGAAACATTTGAAGACCTACTCCGAGAATTGGGAGTCGACCCTAGTATCCACACCATAGTC
CGTAGCGCCGGGAGATGGATGGATCCGGCAGCGGCAGCAGCACGAGTTCCAGTGAGATTCCACCGCACGCTCCAACGCCT
AGGAATCGACCCCAATAGCGATGCCCGGAGCATCCGCGACATGCTACAAGAGTTCTATCGAGTGGTGTACCATGGAGAGG
TGTACTGGGCTGGCCGAGTCATCAGGCCTCGTCCTTCGTCCATGCCAACGCCCGTGATAGGACGACGTCGCCGCGCCGCC
GACGGGGATGCCCCGATGCAGCCGCCGAGCAAGTACGCTCGAGTACACGCCGTGTCGCGCGATGTCCTCCTGGGCCTCGC
GCTGACGAAGGCGTGCGACGCGAGGCAGGAGGAGTGCGCCGTGTGCCTCAGCGACTTCGAGGAGAAAGACAGGCTGAGGA
CGATGCCGTGTAACCACTCCTTCCACGAGAACTGCCTCTTCCGTTGGCTCAGGGATAGCTGCCTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30811.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis