Browse Element(s) Details


OsAffx.30829.2.S1_at

Description tigr:9637.m02161
TID=OsAffx.30829.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2510011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os11g056301/11SOS2-like protein kinase, putative
LOC_Os04g081701/11NAF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25080OsAffx.6390.1.S1_at11/119+15002992..15003484hypothetical protein
LOC_Os09g25090Os.11334.1.S1_x_at11/119+15008141..15009836Protein kinase domain containing protein, expressed
LOC_Os09g25100OsAffx.30829.2.S1_at11/119+15026337..15027688CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os09g25100OsAffx.30829.2.S1_x_at11/119+15026337..15027688CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os09g25110NANA9+15030072..15033299transposon protein, putative, unclassified
LOC_Os09g25120NANA9+15033926..15040081transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30829.2.S1_at--464--4571Chr09:15026959..15026983 (25 bp)
GCGCGCTGCCGTTCCAGGACGACAA
LOC_Os09g25100
OsAffx.30829.2.S1_at--279--6691Chr09:15026969..15026993 (25 bp)
GTTCCAGGACGACAACCTCGTGTGC
LOC_Os09g25100
OsAffx.30829.2.S1_at--386--9231Chr09:15026971..15026995 (25 bp)
TCCAGGACGACAACCTCGTGTGCAT
LOC_Os09g25100
OsAffx.30829.2.S1_at--134--971Chr09:15026974..15026998 (25 bp)
AGGACGACAACCTCGTGTGCATGTA
LOC_Os09g25100
OsAffx.30829.2.S1_at--582--8091Chr09:15026975..15026999 (25 bp)
GGACGACAACCTCGTGTGCATGTAC
LOC_Os09g25100
OsAffx.30829.2.S1_at--300--1851Chr09:15026977..15027001 (25 bp)
ACGACAACCTCGTGTGCATGTACCG
LOC_Os09g25100
OsAffx.30829.2.S1_at--658--2631Chr09:15026982..15027006 (25 bp)
AACCTCGTGTGCATGTACCGCAAGA
LOC_Os09g25100
OsAffx.30829.2.S1_at--801--8612Chr09:15027036..15027060 (25 bp)
TGGGTGACGACGGACGCCCGGAAGC
LOC_Os09g25100
OsAffx.30829.2.S1_at--1113--5591Chr09:15027216..15027240 (25 bp)
GACAAGGACGAGCCGCCCGAGGTGC
LOC_Os09g25100
OsAffx.30829.2.S1_at--792--4053Chr09:15027233..15027257 (25 bp)
CGAGGTGCTGAACGCCTTCCACCTG
LOC_Os09g25100
OsAffx.30829.2.S1_at--766--3491Chr09:15027473..15027497 (25 bp)
CATGGAGTACCGGCCGTTCTTCAGC
LOC_Os09g25100
Target Sequence 
GCGCGCTGCCGTTCCAGGACGACAACCTCGTGTGCATGTACCGCAAGATGCGGCGGGGTGACTTCTGCTGCCCGCCGTGG
GTGACGACGGACGCCCGGAAGCTCATCAAGTCGCTGCTCGACCCCAACCCGGGCACCCGCATCACCGTCGCCGGCCTCCT
CGAGACGCCGTGGTTCCGGAAGACGGCGCCCGTCCCGCGCCCCATCATCGCCGACCCCGCGGCGGCGCCGGTGGACACGC
GTGGCAATGCCGGCGACGACAAGGACGAGCCGCCCGAGGTGCTGAACGCCTTCCACCTGATCTCCCTGTCCGAGGGCTTC
GACCTGTCGCCGCTGTTCGAGCACGACCCCGCCGCGTCGCCGGGGCGGGCCACGGCGCGCGCGGGCGGCACGCGGTTCGC
GACGCGGGAGGCGGCGAGCGGCGTGGTCGCGCGGCTGGAGGCGCTCGCGATGGGCGGCGCACGCGTGGCGCCGTCGTTGC
TCATGGTGGACGTCAAGAAGGATGGCGGCGACGCCATGGAGTACCGGCCGTTCTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30829.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis