Browse Element(s) Details


OsAffx.6390.1.S1_at

Description tigr:9637.m02159
TID=OsAffx.6390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2508011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25070Os.48082.1.S1_at11/119+14991918..14993887WRKY DNA binding domain containing protein, expressed
LOC_Os09g25080OsAffx.6390.1.S1_at11/119+15002992..15003484hypothetical protein
LOC_Os09g25090Os.11334.1.S1_x_at11/119+15008141..15009836Protein kinase domain containing protein, expressed
LOC_Os09g25100OsAffx.30829.2.S1_at11/119+15026337..15027688CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os09g25100OsAffx.30829.2.S1_x_at11/119+15026337..15027688CBL-interacting serine/threonine-protein kinase 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6390.1.S1_at--628--9311Chr09:15003068..15003092 (25 bp)
TCCCGGATGAGCGAGGTGAAGCCAA
LOC_Os09g25080
OsAffx.6390.1.S1_at--872--1851Chr09:15003114..15003175 (25 bp)
ACGAGATGCGGTGCACAACCCATTT
LOC_Os09g25080
OsAffx.6390.1.S1_at--841--611Chr09:15003119..15003180 (25 bp)
ATGCGGTGCACAACCCATTTCGATG
LOC_Os09g25080
OsAffx.6390.1.S1_at--1148--2591Chr09:15003167..15003191 (25 bp)
AACCCATTTCGATGCCGCATGGAGC
LOC_Os09g25080
OsAffx.6390.1.S1_at--916--2051Chr09:15003243..15003267 (25 bp)
ACTTCGACTGGGATGAGGCAGCAAA
LOC_Os09g25080
OsAffx.6390.1.S1_at--898--9491Chr09:15003316..15003340 (25 bp)
TCTCCGTCCGCTGGTGGAAGAGGCA
LOC_Os09g25080
OsAffx.6390.1.S1_at--726--3251Chr09:15003347..15003371 (25 bp)
CAACGGGTGGGCTCCGACGGATCAA
LOC_Os09g25080
OsAffx.6390.1.S1_at--305--8311Chr09:15003356..15003380 (25 bp)
GGCTCCGACGGATCAAAGAGTGTGC
LOC_Os09g25080
OsAffx.6390.1.S1_at--821--3951Chr09:15003364..15003388 (25 bp)
CGGATCAAAGAGTGTGCAGGGAATT
LOC_Os09g25080
OsAffx.6390.1.S1_at--111--1051Chr09:15003408..15003432 (25 bp)
AGGTGTGGGCCCCACGGATGGCAAG
LOC_Os09g25080
OsAffx.6390.1.S1_at--923--8491Chr09:15003426..15003450 (25 bp)
TGGCAAGCGGGCTTTGGCTAGCAAA
LOC_Os09g25080
Target Sequence 
TCCCGGATGAGCGAGGTGAAGCCAAGGAGCGTGAGGTTGCTCGCCCACGAGATGCGGTGCACAACCCATTTCGATGCCGC
ATGGAGCTCGGGCGGAGGCTTCCCAAGACGATGATGCCTCCCCCTCCTTCCTTCCTGGACTTCGACTGGGATGAGGCAGC
AAAGGACGAGGGCGTAGGTAGTGGAGGCGGCGACCCGGCGGGTGGGAGGCCTCTCCGTCCGCTGGTGGAAGAGGCAGCGA
CACAACGGGTGGGCTCCGACGGATCAAAGAGTGTGCAGGGAATTAAAGAGAGAGAGGAGGAGAAGGTGTGGGCCCCACGG
ATGGCAAGCGGGCTTTGGCTAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis