Browse Element(s) Details


Os.48082.1.S1_at

Description gb:AK067834.1
DB_XREF= gi:32977852
TID=Os.48082.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121C08, full insert sequence.
FL= gb:AK067834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2507011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25050Os.36403.1.S1_at11/119+14970347..14974374pentatricopeptide, putative, expressed
LOC_Os09g25060Os.25606.1.S1_at9/119+14975022..14976712WRKY DNA binding domain containing protein, expressed
LOC_Os09g25070Os.48082.1.S1_at11/119+14991918..14993887WRKY DNA binding domain containing protein, expressed
LOC_Os09g25080OsAffx.6390.1.S1_at11/119+15002992..15003484hypothetical protein
LOC_Os09g25090Os.11334.1.S1_x_at11/119+15008141..15009836Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48082.1.S1_at--822--10031Chr09:14993020..14993044 (25 bp)
TAGAGCTTACTTCCGCTGCGCATTC
LOC_Os09g25070
Os.48082.1.S1_at--338--3011Chr09:14992413..14992437 (25 bp)
AATGCTAGTGGCGACCTACGAGGGA
LOC_Os09g25070
Os.48082.1.S1_at--779--6131Chr09:14992394..14992418 (25 bp)
GAGGGAGAACACAACCATGCCCTGT
LOC_Os09g25070
Os.48082.1.S1_at--810--1411Chr09:14992363..14992387 (25 bp)
AGACAACCGAATTCGTCGCCAGCGG
LOC_Os09g25070
Os.48082.1.S1_at--7--391Chr09:14992256..14992280 (25 bp)
ATCACACTCGACCTGACGAACCAAG
LOC_Os09g25070
Os.48082.1.S1_at--1058--5411Chr09:14992239..14992263 (25 bp)
GAACCAAGCAGGGTCCGGATCGATC
LOC_Os09g25070
Os.48082.1.S1_at--810--7711Chr09:14992128..14992152 (25 bp)
GGTGGTGCAAGTGCTCAAGAACGAC
LOC_Os09g25070
Os.48082.1.S1_at--783--4251Chr09:14992075..14992099 (25 bp)
CCGTGGCCGCTAGAGTTGTGGATCA
LOC_Os09g25070
Os.48082.1.S1_at--529--8571Chr09:14992057..14992081 (25 bp)
TGGATCAAATCCCACACATTCCTGT
LOC_Os09g25070
Os.48082.1.S1_at--491--2191Chr09:14992044..14992068 (25 bp)
ACACATTCCTGTTCATTTGTAGTTG
LOC_Os09g25070
Os.48082.1.S1_at--307--6931Chr09:14991982..14992006 (25 bp)
GTAGGCAGTATATATATCCCAAAAT
LOC_Os09g25070
Target Sequence 
TAGAGCTTACTTCCGCTGCGCATTCGCGCCGTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAA
TGCTAGTGGCGACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAGCGGCTGCACT
ACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCAC
ACTCGACCTGACGAACCAAGCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCG
TCACGGTGCTCTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGCCGAGTTCGTG
GAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACACATTCCTGTTCATTTGTAGTTGTTTTTTTT
TTTCTCTTTGAGAACGTTGATTTGTAGTTTGTAGGCAGTATATATATCCCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis