Browse Element(s) Details


Os.36403.1.S1_at

Description gb:AK063513.1
DB_XREF= gi:32973531
TID=Os.36403.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G04, full insert sequence.
FL= gb:AK063513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2505011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25010OsAffx.30011.1.S1_at11/119+14944844..14947895hypothetical protein
LOC_Os09g25030NANA9+14956166..14956735hypothetical protein
LOC_Os09g25040OsAffx.17887.1.S1_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.17887.1.S1_x_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.27510.2.S1_x_at1/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25050Os.36403.1.S1_at11/119+14970347..14974374pentatricopeptide, putative, expressed
LOC_Os09g25060Os.25606.1.S1_at9/119+14975022..14976712WRKY DNA binding domain containing protein, expressed
LOC_Os09g25070Os.48082.1.S1_at11/119+14991918..14993887WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36403.1.S1_at--278--2411Chr09:14972520..14972544 (25 bp)
AAACAGTAGATTGTCCCTCCTGCTG
LOC_Os09g25050
Os.36403.1.S1_at--848--10631Chr09:14973826..14973850 (25 bp)
TTCGCAGATGATGCCCTTTTCAGGA
LOC_Os09g25050
Os.36403.1.S1_at--762--3871Chr09:14973905..14973929 (25 bp)
CTGTCCATACTTGGCCTATTGATCA
LOC_Os09g25050
Os.36403.1.S1_at--1053--8491Chr09:14973945..14973969 (25 bp)
TGGCATGAGTTCTGGCCTGTTCAAA
LOC_Os09g25050
Os.36403.1.S1_at--1032--6831Chr09:14973980..14974004 (25 bp)
GTTTCTTTGGACTATCAGCCAGGCT
LOC_Os09g25050
Os.36403.1.S1_at--784--10771Chr09:14974015..14974134 (25 bp)
TTGATATGCTCTCGCTGTGATACAC
LOC_Os09g25050
Os.36403.1.S1_at--870--1431Chr09:14974155..14974179 (25 bp)
AGAACTGATCCCATAGTCTGCTGCT
LOC_Os09g25050
Os.36403.1.S1_at--749--8271Chr09:14974180..14974204 (25 bp)
GGCAGGCGACACCTTAGGGTTTATA
LOC_Os09g25050
Os.36403.1.S1_at--806--5131Chr09:14974216..14974240 (25 bp)
GCAAATGGCTCATGTCTTTTCGAAT
LOC_Os09g25050
Os.36403.1.S1_at--141--8951Chr09:14974240..14974264 (25 bp)
TGACTCTAGCCAGATGTATTCCGTG
LOC_Os09g25050
Os.36403.1.S1_at--448--7531Chr09:14974262..14974286 (25 bp)
GTGGCGGCACCTCAGTTTATATGTG
LOC_Os09g25050
Target Sequence 
AAACAGTAGATTGTCCCTCCTGCTGAGTTTTCCAGGAAGTGCAGATAGCCAAGATTTTCCCAACTGCCCATCAGAAAAGA
TATATCATGGATGGTTCGCAGATGATGCCCTTTTCAGGATGTTGCATTTGGTGCAGATCGAAATCTGTGTATATGTATTG
TATCTGTCAGTATCTGTCCATACTTGGCCTATTGATCATGCAAGTATTGTCTGTGGCATGAGTTCTGGCCTGTTCAAAAC
TTCAATATGTTTCTTTGGACTATCAGCCAGGCTATTAAAATATTTGATATGCTCTCGCTGTGATACACTATCTTCTGCAG
AAGGAGTAAGAACTGATCCCATAGTCTGCTGCTGGCAGGCGACACCTTAGGGTTTATATCTGCAAAACTGCAAATGGCTC
ATGTCTTTTCGAATGACTCTAGCCAGATGTATTCCGTGGCGGCACCTCAGTTTATATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis