Browse Element(s) Details


OsAffx.30011.1.S1_at

Description tigr:9637.m02152
TID=OsAffx.30011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2501011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24990Os.15259.1.S1_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g24990Os.15259.1.S2_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_x_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25010OsAffx.30011.1.S1_at11/119+14944844..14947895hypothetical protein
LOC_Os09g25030NANA9+14956166..14956735hypothetical protein
LOC_Os09g25040OsAffx.17887.1.S1_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.17887.1.S1_x_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.27510.2.S1_x_at1/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25050Os.36403.1.S1_at11/119+14970347..14974374pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30011.1.S1_at--43--4111Chr09:14945485..14945509 (25 bp)
CGAAGAAGACCGATCGTCTCGTCAT
LOC_Os09g25010
OsAffx.30011.1.S1_at--650--271Chr09:14945519..14945543 (25 bp)
ATAGGTAACACAACACCCGTGGCTT
LOC_Os09g25010
OsAffx.30011.1.S1_at--885--8111Chr09:14946929..14946949 (21 bp)
GGACTTCCCGTATATCAGGCGCTAA
LOC_Os09g25010
OsAffx.30011.1.S1_at--801--10271Chr09:14946974..14946998 (25 bp)
TTTGCACTGCCACAACGACGTTCAT
LOC_Os09g25010
OsAffx.30011.1.S1_at--995--951Chr09:14947636..14947660 (25 bp)
AGGACTTTGTCGACAATCTGCTCGA
LOC_Os09g25010
OsAffx.30011.1.S1_at--447--9351Chr09:14947657..14947681 (25 bp)
TCGACACCGCCGTTAAGTGCATGAG
LOC_Os09g25010
OsAffx.30011.1.S1_at--756--691Chr09:14947677..14947701 (25 bp)
ATGAGGACGGCATCTCTAATCTACA
LOC_Os09g25010
OsAffx.30011.1.S1_at--1051--9751Chr09:14947693..14947717 (25 bp)
TAATCTACACTCTTTCCACTGGCGA
LOC_Os09g25010
OsAffx.30011.1.S1_at--979--1451Chr09:14947724..14947748 (25 bp)
AGAAGATGAGCGTCCCATCCTGGAC
LOC_Os09g25010
OsAffx.30011.1.S1_at--299--591Chr09:14947797..14947821 (25 bp)
ATGCCGATGGACTCAGCGCCAAATT
LOC_Os09g25010
OsAffx.30011.1.S1_at--310--4551Chr09:14947812..14947836 (25 bp)
GCGCCAAATTCGTCTCTTGATGTGG
LOC_Os09g25010
Target Sequence 
CGAAGAAGACCGATCGTCTCGTCATAGGGGTAGGATAGGTAACACAACACCCGTGGCTTTGTGGGTTGGGACTTCCCGTA
TATCAGGCGCTAACTCTTCTCCCTCCTCCCTCTCTCGTTTGCACTGCCACAACGACGTTCATGTCGAAGGACAGAAGGAC
TTTGTCGACAATCTGCTCGACACCGCCGTTAAGTGCATGAGGACGGCATCTCTAATCTACACTCTTTCCACTGGCGAGGA
GCCAGAAGATGAGCGTCCCATCCTGGACATGGCACAGTTCAGGCAAGAAATGGAGGTGCTCGATGACGGCACAGCCATGC
CGATGGACTCAGCGCCAAATTCGTCTCTTGATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis