Browse Element(s) Details


Os.15259.1.S2_at

Description gb:AK065377.1
DB_XREF= gi:32975395
TID=Os.15259.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021M02, full insert sequence.
FL= gb:AK065377.1 gb:AK099984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2499011/11CAF1 family ribonuclease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24990Os.15259.1.S1_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g24990Os.15259.1.S2_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_x_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25010OsAffx.30011.1.S1_at11/119+14944844..14947895hypothetical protein
LOC_Os09g25030NANA9+14956166..14956735hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15259.1.S2_at--1085--8851Chr09:14930833..14930857 (25 bp)
TGATGCCATGACAATGCCCTGTTAT
LOC_Os09g24990
Os.15259.1.S2_at--325--7051Chr09:14930896..14930920 (25 bp)
GTAAACAGCGGCTACACTGATCCTG
LOC_Os09g24990
Os.15259.1.S2_at--439--10731Chr09:14930947..14930971 (25 bp)
TTGCATGTTGTGGACAGTTGCCTCC
LOC_Os09g24990
Os.15259.1.S2_at--885--1231Chr09:14930962..14930986 (25 bp)
AGTTGCCTCCGTATTCATACTGTTT
LOC_Os09g24990
Os.15259.1.S2_at--286--7491Chr09:14931054..14931078 (25 bp)
GTGGGATCCATATATAGCCTCTCTA
LOC_Os09g24990
Os.15259.1.S2_at--80--9031Chr09:14931107..14931131 (25 bp)
TGCACTTTCAGAGTTTCACCCTGTA
LOC_Os09g24990
Os.15259.1.S2_at--603--10511Chr09:14931121..14931145 (25 bp)
TTCACCCTGTAGCTTCTGCATAGAA
LOC_Os09g24990
Os.15259.1.S2_at--660--7311Chr09:14931201..14931225 (25 bp)
GTGCTGATTAGCATTTCTCTCTGTG
LOC_Os09g24990
Os.15259.1.S2_at--1103--9511Chr09:14931216..14931240 (25 bp)
TCTCTCTGTGCTGGTATGCTACGAG
LOC_Os09g24990
Os.15259.1.S2_at--991--5231Chr09:14931263..14931287 (25 bp)
GAATCTGGTGCCTATCTGTTACCTT
LOC_Os09g24990
Os.15259.1.S2_at--1157--10271Chr09:14931286..14931310 (25 bp)
TTTGCTCTCTGTACTTGTCTAGTTT
LOC_Os09g24990
Target Sequence 
TGATGCCATGACAATGCCCTGTTATCTGTTAGGCTATCTGTTATGGGCTAGGATTCATGGAGGGTAAACAGCGGCTACAC
TGATCCTGCAGGCTGCTAAGTTTTTTAGTTTAATTTGCATGTTGTGGACAGTTGCCTCCGTATTCATACTGTTTTGCTTA
TCATGCAGTCTGCATTTTCAGAGTTTCAGCATTGTATGTTGTCGACAGTTGTCACTCAATTGTGGGATCCATATATAGCC
TCTCTATTAATACTGTTTTGATTATCATGCAGTCTGCACTTTCAGAGTTTCACCCTGTAGCTTCTGCATAGAAAACTTTG
AATTTTGTAGATAGTTTCTGTGCCATAATTATGTTGTTGGTGTGATAGGTGCTGATTAGCATTTCTCTCTGTGCTGGTAT
GCTACGAGAGAAGAGTTTTTGATTCAGTAGGAATCTGGTGCCTATCTGTTACCTTTGCTCTCTGTACTTGTCTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15259.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis