Browse Element(s) Details


Os.14393.2.S1_at

Description gb:AK106445.1
DB_XREF= gi:32991654
TID=Os.14393.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E02, full insert sequence.
FL= gb:AK106445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g249709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24990Os.15259.1.S1_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g24990Os.15259.1.S2_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_x_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14393.2.S1_at--728--10751Chr09:14917730..14917754 (25 bp)
TTGAAAATTGTTTCATCAGCTGACC
LOC_Os09g24970
Os.14393.2.S1_at--154--10771Chr09:14917758..14917782 (25 bp)
TTGTTCATTAGTAAATTTCAAAGCC
LOC_Os09g24970
Os.14393.2.S1_at--527--5951Chr09:14917810..14917830 (21 bp)
GAGAAGTCGTATTTATGATCCCCTG
LOC_Os09g24970
Os.14393.2.S1_at--574--1151NONE
AGTCGTATTTATGATCCCCTGGTCT
NONE
Os.14393.2.S1_at--664--10431NONE
TTATGATCCCCTGGTCTTCCTTTTT
NONE
Os.14393.2.S1_at--296--151Chr09:14917850..14917874 (25 bp)
ATTAGGTGGCGAATTTGCTTAGTAA
LOC_Os09g24970
Os.14393.2.S1_at--269--8391Chr09:14917857..14917881 (25 bp)
GGCGAATTTGCTTAGTAATTGGCTA
LOC_Os09g24970
Os.14393.2.S1_at--749--7071Chr09:14917871..14917895 (25 bp)
GTAATTGGCTAATTCCCTCAAGTCA
LOC_Os09g24970
Os.14393.2.S1_at--71--8491Chr09:14917876..14917900 (25 bp)
TGGCTAATTCCCTCAAGTCATCTGG
LOC_Os09g24970
Os.14393.2.S1_at--1108--3151Chr09:14917881..14917905 (25 bp)
AATTCCCTCAAGTCATCTGGTTGGT
LOC_Os09g24970
Os.14393.2.S1_at--426--4291Chr09:14917886..14917910 (25 bp)
CCTCAAGTCATCTGGTTGGTTGATT
LOC_Os09g24970
Target Sequence 
TTGAAAATTGTTTCATCAGCTGACCNAATTGTTCATTAGTAAATTTCAAAGCCNAAGAAATCAAACAGATAGAAGAGTTA
GAGAAGTCGTATTTATGATCCCCTGGTCTTCCTTTTTCCAAATTAGGTGGCGAATTTGCTTAGTAATTGGCTAATTCCCT
CAAGTCATCTGGTTGGTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14393.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis