Browse Element(s) Details


OsAffx.30009.1.S1_at

Description tigr:9637.m02143
TID=OsAffx.30009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g249248/11Sugar carrier protein A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24890NANA9+14863763..14864002hypothetical protein
LOC_Os09g24900Os.23266.1.S1_at11/119+14866405..14869920Ankyrin protein kinase, putative, expressed
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30009.1.S1_at--974--2091NONE
ACATCGGCATCTCCGCAGTAGAATT
NONE
OsAffx.30009.1.S1_at--124--9451NONE
TCGGCATCTCCGCAGTAGAATTTGG
NONE
OsAffx.30009.1.S1_at--581--451NONE
ATCTCCGCAGTAGAATTTGGAACAA
NONE
OsAffx.30009.1.S1_at--296--2191Chr09:14886912..14886936 (25 bp)
ACAAATTCAGGGAAGCAGAAAAACT
LOC_Os09g24924
OsAffx.30009.1.S1_at--973--8631Chr09:14886936..14886960 (25 bp)
TGGGAACCTTTTACACACGCAAAAG
LOC_Os09g24924
OsAffx.30009.1.S1_at--1073--10371Chr09:14886944..14886968 (25 bp)
TTTTACACACGCAAAAGCTGCTTTT
LOC_Os09g24924
OsAffx.30009.1.S1_at--530--2431Chr09:14886956..14886980 (25 bp)
AAAAGCTGCTTTTGACTACACTACT
LOC_Os09g24924
OsAffx.30009.1.S1_at--1118--4751Chr09:14886960..14886984 (25 bp)
GCTGCTTTTGACTACACTACTACAC
LOC_Os09g24924
OsAffx.30009.1.S1_at--559--4871Chr09:14886963..14886987 (25 bp)
GCTTTTGACTACACTACTACACACG
LOC_Os09g24924
OsAffx.30009.1.S1_at--475--10751Chr09:14886967..14886991 (25 bp)
TTGACTACACTACTACACACGTGGC
LOC_Os09g24924
OsAffx.30009.1.S1_at--894--2131Chr09:14886973..14886997 (25 bp)
ACACTACTACACACGTGGCCGGAAT
LOC_Os09g24924
Target Sequence 
ACATCGGCATCTCCGCAGTAGAATTTGGAACAAATTCAGGGAAGCAGAAAAACTGGGAACCTTTTACACACGCAAAAGCT
GCTTTTGACTACACTACTACACACGTGGCCGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis