Browse Element(s) Details


Os.22673.1.S1_at

Description gb:CA765535
DB_XREF= gi:27547235
DB_XREF=AF53-Rpf_07_O05_T7_031.ab1
CLONE=C0002645
TID=Os.22673.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22673 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_178180.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2495411/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0010050biological_processvegetative phase change
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0004525molecular_functionribonuclease III activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22673.1.S1_at--127--8151Chr09:14900070..14900094 (25 bp)
GGACACGCCAATTAATCTCAGACGC
LOC_Os09g24954
Os.22673.1.S1_at--396--9751Chr09:14900082..14900106 (25 bp)
TAATCTCAGACGCTCCAGGTAGTAA
LOC_Os09g24954
Os.22673.1.S1_at--679--5791Chr09:14900090..14900114 (25 bp)
GACGCTCCAGGTAGTAACTTAAACG
LOC_Os09g24954
Os.22673.1.S1_at--954--1851Chr09:14900112..14900136 (25 bp)
ACGACTTCCAGGTAGCACAGTGCTA
LOC_Os09g24954
Os.22673.1.S1_at--662--2131Chr09:14900128..14900152 (25 bp)
ACAGTGCTAACCCAGTGTTCCTTTT
LOC_Os09g24954
Os.22673.1.S1_at--813--7951Chr09:14900209..14900233 (25 bp)
GGATCAGTTGCTCCATGTACATATC
LOC_Os09g24954
Os.22673.1.S1_at--986--6671Chr09:14900215..14900239 (25 bp)
GTTGCTCCATGTACATATCCGAAAT
LOC_Os09g24954
Os.22673.1.S1_at--927--231Chr09:14900229..14900253 (25 bp)
ATATCCGAAATTCTTGCTCTACGTA
LOC_Os09g24954
Os.22673.1.S1_at--845--731Chr09:14900284..14900308 (25 bp)
ATGTTATGTCGTACATGGCCACATG
LOC_Os09g24954
Os.22673.1.S1_at--298--7691Chr09:14900309..14900333 (25 bp)
GGGTCCCTTTTTGTATATACTGCTA
LOC_Os09g24954
Os.22673.1.S1_at--527--4731Chr09:14900330..14900354 (25 bp)
GCTACTACGTATTTACCACTTGGGC
LOC_Os09g24954
Target Sequence 
GGACACGCCAATTAATCTCAGACGCTCCAGGTAGTAACTTAAACGACTTCCAGGTAGCACAGTGCTAACCCAGTGTTCCT
TTTCCACTCGCGTGNATTTCATCCACTACAGGGGCAGTGTTCTTTCTTAATCCAAGGTTGGATCAGTTGCTCCATGTACA
TATCCGAAATTCTTGCTCTACGTANGTGTCATCTATCTAGTCCAGGANANTTCTATGTTATGTCGTACATGGCCACATGG
GGTCCCTTTTTGTATATACTGCTACTACGTATTTACCACTTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis