Browse Element(s) Details


OsAffx.30010.1.S1_at

Description tigr:9637.m02149
TID=OsAffx.30010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=golgi snare 11 protein (atgos11) (golgi snap receptor complex member 1-1). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g249803/11Vesicle transport v-SNARE protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24990Os.15259.1.S1_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g24990Os.15259.1.S2_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_x_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25010OsAffx.30011.1.S1_at11/119+14944844..14947895hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006944biological_processmembrane fusion
GO:0016021cellular_componentintegral to membrane
GO:0000149molecular_functionSNARE binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30010.1.S1_at--1032--5051NONE
GCAGCTTCAGCAAGAATTCTATCGG
NONE
OsAffx.30010.1.S1_at--702--111Chr09:14923634..14923658 (25 bp)
ATTCTATCGGCTTCGATCAAGCCTC
LOC_Os09g24980
OsAffx.30010.1.S1_at--470--6451Chr09:14923620..14923644 (25 bp)
GATCAAGCCTCAGAGTGAAGCAACA
LOC_Os09g24980
OsAffx.30010.1.S1_at--290--2451Chr09:14923599..14923623 (25 bp)
AACAACATGCTTCGCTCCTTGACCT
LOC_Os09g24980
OsAffx.30010.1.S1_at--856--1671NONE
AGCCGGCTTCCTACGGTTGCTGGTT
NONE
OsAffx.30010.1.S1_at--939--4291NONE
TCCTACGGTTGCTGGTTGCGGTTTC
NONE
OsAffx.30010.1.S1_at--457--5411Chr09:14920555..14920579 (25 bp)
GAAGCTGTTCAGGAACCAAGCAAAA
NONE
OsAffx.30010.1.S1_at--731--451NONE
ATCTACAAATTATCCCAGATCTGGA
NONE
OsAffx.30010.1.S1_at--189--10211Chr09:14919944..14919968 (25 bp)
TATTCATAATACTGCACATCCGGAT
NONE
OsAffx.30010.1.S1_at--1021--5111Chr09:14919931..14919955 (25 bp)
GCACATCCGGATGTATCAGATTTAT
NONE
OsAffx.30010.1.S1_at--907--6631Chr09:14919898..14919922 (25 bp)
GTCCGACGAAGACAGTAGCCCTACC
NONE
Target Sequence 
GCAGCTTCAGCAAGAATTCTATCGGCTTCGATCAAGCCTCAGAGTGAAGCAACAACATGCTTCGCTCCTTGACCTAAGAG
ATTTTGACAGAGCAAAGTTTGATGTTGAGAGTGGAGACTCAGCCGATCAAGCTCTTCTTAGAGAACAAGCTGCAATCAGT
AGGAGTTCTGGACAGATGGATAATGTGATATCACATGCTCAAGCAACGCTAGGAACTCTCATGTCACAACGATCAACATT
TGGTGGCATCACTACAAAGATAAGCAATGTTAGTAGCCGGCTTCCTACGGTTGCTGGTTGCGGTTTCCAGGTTGAAGCTG
TTCAGGAACCAAGCAAAAGCAGGAAACATCTACAAATTATCCCAGATCTGGATAGTAGATCGTTTATATTCATAATACTG
CACATCCGGATGTATCAGATTTATTTTATTTCGTCCGACGAAGACAGTAGCCCTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis