Browse Element(s) Details


Os.7749.1.S1_at

Description gb:AK101300.1
DB_XREF= gi:32986509
TID=Os.7749.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033J17, full insert sequence.
FL= gb:AK061283.1 gb:AK101300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2498011/11Vesicle transport v-SNARE protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24990Os.15259.1.S1_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g24990Os.15259.1.S2_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_x_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25010OsAffx.30011.1.S1_at11/119+14944844..14947895hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006944biological_processmembrane fusion
GO:0016021cellular_componentintegral to membrane
GO:0000149molecular_functionSNARE binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7749.1.S1_at--1067--4471Chr09:14921037..14921149 (25 bp)
GCCGGCTTCCTACGATCAATCATAT
LOC_Os09g24980
Os.7749.1.S1_at--892--9731Chr09:14921022..14921046 (25 bp)
TCAATCATATCCTCGCGTCAATTAG
LOC_Os09g24980
Os.7749.1.S1_at--564--5331Chr09:14920991..14921015 (25 bp)
GAAGTCGATGGACACAATCATTCTT
LOC_Os09g24980
Os.7749.1.S1_at--584--3071Chr09:14920976..14921000 (25 bp)
AATCATTCTTTCACTTGTCGCGTCT
LOC_Os09g24980
Os.7749.1.S1_at--1021--3651Chr09:14920939..14920963 (25 bp)
CTTATTCTCGTCTACTGGTTGTCAA
LOC_Os09g24980
Os.7749.1.S1_at--528--7571Chr09:14920909..14920933 (25 bp)
GGGCTGTCAACTTGTCATAGCAAAG
LOC_Os09g24980
Os.7749.1.S1_at--520--2831Chr09:14920869..14920893 (25 bp)
AAGTTTGGATCACACTGTCAGTGCA
LOC_Os09g24980
Os.7749.1.S1_at--373--6791Chr09:14920806..14920830 (25 bp)
GTTATCCTGTTTTGATGGTTCTTCA
LOC_Os09g24980
Os.7749.1.S1_at--350--9031Chr09:14920764..14920788 (25 bp)
TGCACAGCCGCATGACTTCTAGTAT
LOC_Os09g24980
Os.7749.1.S1_at--519--3651Chr09:14920749..14920773 (25 bp)
CTTCTAGTATCGACTGGACCCATAT
LOC_Os09g24980
Os.7749.1.S1_at--250--8111Chr09:14920734..14920758 (25 bp)
GGACCCATATACTACATGTACTTGT
LOC_Os09g24980
Target Sequence 
GCCGGCTTCCTACGATCAATCATATCCTCGCGTCAATTAGAAGAAANGAAGTCGATGGACACAATCATTCTTTCACTTGT
CGCGTCTGTCTGCGCCTTTCTTATTCTCGTCTACTGGTTGTCAAAGTAGGGGCTGTCAACTTGTCATAGCAAAGGCATTA
GGGTGTTGTAAGTTTGGATCACACTGTCAGTGCAGATAATCGAGATTGGTGTTTGTACAATATTGATTCAATGTTATCCT
GTTTTGATGGTTCTTCAGGCATTGNGCCTCTCACTGCACAGCCGCATGACTTCTAGTATCGACTGGACCCATATACTACA
TGTACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis