Browse Element(s) Details


Os.14393.1.S1_x_at

Description gb:AK101668.1
DB_XREF= gi:32986877
TID=Os.14393.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058C01, full insert sequence.
FL= gb:AK101668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2497011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24990Os.15259.1.S1_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g24990Os.15259.1.S2_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_x_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14393.1.S1_x_at--67--5831Chr09:14917267..14917291 (25 bp)
GACCGCGACTCTGCCGAGGTCAAGG
LOC_Os09g24970
Os.14393.1.S1_x_at--58--1511Chr09:14917295..14917319 (25 bp)
AGCACCTCCTCGAAAACGCCGGGAG
LOC_Os09g24970
Os.14393.1.S1_x_at--397--9411Chr09:14917565..14917589 (25 bp)
TCGTCTACGCCTGGAAATGCTAGCA
LOC_Os09g24970
Os.14393.1.S1_x_at--1114--5571Chr09:14917578..14917602 (25 bp)
GAAATGCTAGCAATTGGCGCCGAGC
LOC_Os09g24970
Os.14393.1.S1_x_at--914--11Chr09:14917590..14917614 (25 bp)
ATTGGCGCCGAGCAAAGCATTCTTT
LOC_Os09g24970
Os.14393.1.S1_x_at--394--2351Chr09:14917603..14917627 (25 bp)
AAAGCATTCTTTCCATTGATGATGA
LOC_Os09g24970
Os.14393.1.S1_x_at--418--131Chr09:14917637..14917661 (25 bp)
ATTCAGTGAGATTTTTTCTTCTTCT
LOC_Os09g24970
Os.14393.1.S1_x_at--103--9571Chr09:14917662..14917686 (25 bp)
TCTTCTTCTATCTTCTTCGGATTGT
LOC_Os09g24970
Os.14393.1.S1_x_at--851--3651Chr09:14917673..14917697 (25 bp)
CTTCTTCGGATTGTTGTAAGTTGCA
LOC_Os09g24970
Os.14393.1.S1_x_at--898--8731Chr09:14917687..14917711 (25 bp)
TGTAAGTTGCAATTGTTATCCGAGC
LOC_Os09g24970
Os.14393.1.S1_x_at--855--551Chr09:14917704..14917728 (25 bp)
ATCCGAGCAATGTTCTTGTGCAGTT
LOC_Os09g24970
Target Sequence 
GACCGCGACTCTGCCGAGGTCAAGGACGAGCACCTCCTCGAAAACGCCGGGAGCGGCGGCGGCGGCGGCGCGTGGGCAGG
CTACCTCGGGAGGTGGGGGCGAGGGGACTGGAGCGAGAGCAGCAGCAACGGGGAGAACCGGAGGAAGAGGGGGCAAGCCC
GGAGGCTGGCCAAGGCGAGCTCGTCGTCATCGGCGTCGGTGGCTTCCTCCTCCGCGTCGTGGGCGAGCGGCTCGACGGTG
ATGGACTGGGCGAGCCCCGAGGAGGCCGAGCTGCAGCGCGGCCATGGCTTCTCCCTCCTCGTCTACGCCTGGAAATGCTA
GCAATTGGCGCCGAGCAAAGCATTCTTTCCATTGATGATGATTGATGGTAATTCAGTGAGATTTTTTCTTCTTCTTCTTC
TTCTATCTTCTTCGGATTGTTGTAAGTTGCAATTGTTATCCGAGCAATGTTCTTGTGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14393.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis