Browse Element(s) Details


OsAffx.17882.1.S1_at

Description tigr:9637.m02145
TID=OsAffx.17882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2494011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24900Os.23266.1.S1_at11/119+14866405..14869920Ankyrin protein kinase, putative, expressed
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17882.1.S1_at--249--1151Chr09:14894685..14894709 (25 bp)
AGTCGCAGTCGCAGATGCGCGCCAT
LOC_Os09g24940
OsAffx.17882.1.S1_at--1063--1411Chr09:14894658..14894682 (25 bp)
AGAAAGTCGTGATCCTGAAGCTCGG
LOC_Os09g24940
OsAffx.17882.1.S1_at--908--5291Chr09:14894495..14894519 (25 bp)
GAAGGCTGAGCCTGTAGCAGAAGCA
LOC_Os09g24940
OsAffx.17882.1.S1_at--677--5391Chr09:14894476..14894500 (25 bp)
GAAGCAGATCGGTACATCGCGCCGG
LOC_Os09g24940
OsAffx.17882.1.S1_at--1005--1311Chr09:14894448..14894472 (25 bp)
AGATGGCACCAGTGCAGTGCGTCAC
LOC_Os09g24940
OsAffx.17882.1.S1_at--838--7311Chr09:14894437..14894461 (25 bp)
GTGCAGTGCGTCACGCCGACGAAGA
LOC_Os09g24940
OsAffx.17882.1.S1_at--934--1811Chr09:14894425..14894449 (25 bp)
ACGCCGACGAAGATGGACCAGCCTG
LOC_Os09g24940
OsAffx.17882.1.S1_at--390--1371Chr09:14894384..14894408 (25 bp)
AGAGCAGTGCATCTCGCCGGCGAAT
LOC_Os09g24940
OsAffx.17882.1.S1_at--239--471Chr09:14894374..14894398 (25 bp)
ATCTCGCCGGCGAATAGCGCGGAGC
LOC_Os09g24940
OsAffx.17882.1.S1_at--265--5411Chr09:14894246..14894270 (25 bp)
GAAGCCGAAAACCTCCCGCGTCTTG
LOC_Os09g24940
OsAffx.17882.1.S1_at--478--8431Chr09:14894214..14894238 (25 bp)
GGCCATCGTTCGTGATCCCGCCGGA
LOC_Os09g24940
Target Sequence 
AGTCGCAGTCGCAGATGCGCGCCATGGAGAAAGTCGTGATCCTGAAGCTCGGGGACCGATTCGCGCCGGAGATCGGTGCG
GCGGTGGCGGTGGAGGCTCCCGCCGCGGACCAGTGCGGTGCAGCGGCGGCGGCGGCGGAGGAGCACGCCGAGCCTGTTGC
GGCGGCTGGGCAGCGCGTCGCGCCGGCGAAGAAGGCTGAGCCTGTAGCAGAAGCAGATCGGTACATCGCGCCGGCGGAGA
TGGCACCAGTGCAGTGCGTCACGCCGACGAAGATGGACCAGCCTGCGGTGGCGGCGGCGGCAGAGCAGTGCATCTCGCCG
GCGAATAGCGCGGAGCCTGCGGTCGCTGCAGAGCAGCGCATCGCCCTCGCCGCGGCGAAGATTCCCCGGCCTGTGGCGGT
GGCGGTGGCGGCGGCGGGACAGCGACGAGCCCCGGCGACGAAGCCGAAAACCTCCCGCGTCTTGTACGGGGGGCCATCGT
TCGTGATCCCGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis