Browse Element(s) Details


Os.5137.1.S1_at

Description gb:AK071371.1
DB_XREF= gi:32981394
TID=Os.5137.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097L09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023097L09, full insert sequence.
FL= gb:AK071371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2491011/11Phosphofructokinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24870OsAffx.17881.1.S1_at11/119+14843149..14846843hypothetical protein
LOC_Os09g24880NANA9+14859622..14860185retrotransposon protein, putative, unclassified
LOC_Os09g24890NANA9+14863763..14864002hypothetical protein
LOC_Os09g24900Os.23266.1.S1_at11/119+14866405..14869920Ankyrin protein kinase, putative, expressed
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5137.1.S1_at--329--10071Chr09:14871400..14871424 (25 bp)
TAGTGACTTTGGTGTCCACATGCAA
LOC_Os09g24910
Os.5137.1.S1_at--943--1151Chr09:14870614..14870638 (25 bp)
AGTCATTTCAAGGACATCGGTGTTC
LOC_Os09g24910
Os.5137.1.S1_at--976--6731Chr09:14870380..14870404 (25 bp)
GTTCATGGAGCCTTTGCCGGGTTCA
LOC_Os09g24910
Os.5137.1.S1_at--330--9691Chr09:14870349..14870373 (25 bp)
TCACATCTGGTATTTGCAACACGCA
LOC_Os09g24910
Os.5137.1.S1_at--100--10651Chr09:14870317..14870341 (25 bp)
TTCCTCCCGATCACAGAAGTCATCA
LOC_Os09g24910
Os.5137.1.S1_at--411--2051Chr09:14870223..14870247 (25 bp)
ACTTCCACTGACCTTGTACTATTTG
LOC_Os09g24910
Os.5137.1.S1_at--319--10811Chr09:14870201..14870225 (25 bp)
TTGGCATTTACCTCACTTCTTTTAT
LOC_Os09g24910
Os.5137.1.S1_at--1112--2471Chr09:14870134..14870158 (25 bp)
AACAGCTCATGTTACCACAAAGGTG
LOC_Os09g24910
Os.5137.1.S1_at--174--9811Chr09:14870092..14870116 (25 bp)
TAACGCGATGACAAGTAACTCTGGT
LOC_Os09g24910
Os.5137.1.S1_at--1010--1231Chr09:14870022..14870046 (25 bp)
AGATTCCTTTTTCTTCGAGATCGGC
LOC_Os09g24910
Os.5137.1.S1_at--1087--6031Chr09:14870006..14870030 (25 bp)
GAGATCGGCTGCGTGATTTCACCTA
LOC_Os09g24910
Target Sequence 
TAGTGACTTTGGTGTCCACATGCAACAGAAGATTAAGAGTCATTTCAAGGACATCGGTGTTCCAGCTGATGTAAAATACA
TTGATCCGACATATATGGTCCGGGCCTGTCGTGCGAATGCATNTGATGCTATCTTGTGCACTGTACTTGGACAAAATGCT
GTTCATGGAGCCTTTGCCGGGTTCAGTGGTATCACATCTGGTATTTGCAACACGCACTACGCTTTCCTCCCGATCACAGA
AGTCATCACAAAACCAAAGCGCGTGAACCCCAACAGCAGGATGTGGCACCGCTGCCTCACTTCCACTGGCCAACCGGACT
TCCACTGACCTTGTACTATTTGGCATTTACCTCACTTCTTTTATTGGAGTTAATTTAGCATTATTTTTGCTAATCATGAG
ACTAGTAACAGCTCATGTTACCACAAAGGTGATCAATAAATAATGTTGTAACGCGATGACAAGTAACTCTGGTAGTTTAT
TTTCAGCACCAATATTTTTGTGTATCTCAATGCTGAAAAGATTCCTTTTTCTTCGAGATCGGCTGCGTGATTTCACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis