Browse Element(s) Details


OsAffx.17881.1.S1_at

Description tigr:9637.m02137
TID=OsAffx.17881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2487011/11hypothetical protein
LOC_Os05g325441/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24830OsAffx.6389.1.S1_at11/119+14820158..14820787hypothetical protein
LOC_Os09g24840Os.48846.1.S1_at9/119+14827980..14829527GAST1 protein precursor, putative, expressed
LOC_Os09g24840OsAffx.27652.1.S1_x_at1/119+14827980..14829527GAST1 protein precursor, putative, expressed
LOC_Os09g24850NANA9+14832051..14838356retrotransposon protein, putative, unclassified, expressed
LOC_Os09g24860OsAffx.17880.1.S1_x_at11/119+14840072..14840437hypothetical protein
LOC_Os09g24870OsAffx.17881.1.S1_at11/119+14843149..14846843hypothetical protein
LOC_Os09g24880NANA9+14859622..14860185retrotransposon protein, putative, unclassified
LOC_Os09g24890NANA9+14863763..14864002hypothetical protein
LOC_Os09g24900Os.23266.1.S1_at11/119+14866405..14869920Ankyrin protein kinase, putative, expressed
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17881.1.S1_at--909--6231Chr09:14843709..14843733 (25 bp)
GATGGTAAGCCTATTCTAGATTTTA
LOC_Os09g24870
OsAffx.17881.1.S1_at--397--5651Chr09:14843659..14843683 (25 bp)
GACAGCATCTTCTATGTCAAGCAAA
LOC_Os09g24870
OsAffx.17881.1.S1_at--546--7911Chr09:14843590..14843614 (25 bp)
GGTTGCATGTAGGTCTGGTTCGAAA
LOC_Os09g24870
OsAffx.17881.1.S1_at--387--2691Chr09:14843504..14843528 (25 bp)
AAGCTAAGCTAATTCACGGTTTTTG
LOC_Os09g24870
OsAffx.17881.1.S1_at--714--10391Chr09:14843484..14843508 (25 bp)
TTTTGTGTTGATCTTGCCAACTTAA
LOC_Os09g24870
OsAffx.17881.1.S1_at--1106--6512Chr09:14843409..14843433 (25 bp)
GATATTCAGCTGGTTGCATCTTCAT
LOC_Os09g24870
OsAffx.17881.1.S1_at--63--4971Chr09:14843394..14843418 (25 bp)
GCATCTTCATTGGAGTCTAACATAA
LOC_Os09g24870
OsAffx.17881.1.S1_at--301--5831Chr09:14843328..14843352 (25 bp)
GACCTCTTTGGTGATGACTTTGATG
LOC_Os09g24870
OsAffx.17881.1.S1_at--1140--3671Chr09:14843286..14843310 (25 bp)
CTTTCTGAACTGTACAAGCTCTGTA
LOC_Os09g24870
OsAffx.17881.1.S1_at--765--2631Chr09:14843271..14843295 (25 bp)
AAGCTCTGTATTGACCTAGGTAAGT
LOC_Os09g24870
OsAffx.17881.1.S1_at--20--5691Chr09:14843220..14843244 (25 bp)
GACTTGGCTCATTTTGAGGAGGTAC
LOC_Os09g24870
Target Sequence 
GATGGTAAGCCTATTCTAGATTTTACTCAGTTGGTTGGCAAGTTTGAAATGACAGCATCTTCTATGTCAAGCAAATATTC
ATCAGCAACCAAGAAACTCAAAAGGAAGAAAACTGATATGGTTGCATGTAGGTCTGGTTCGAAACGATCTAGGGGAAAGA
GAAGTGAAGAAAAATCAGAGTTTTGTGATGAATTTGTTTTGGAGAAAGCTAAGCTAATTCACGGTTTTTGTGTTGATCTT
GCCAACTTAATGAAAACATACGTTCCTGGGGAAGTACATGTGTGTTATAAGAAGATTTTGGATATTCAGCTGGTTGCATC
TTCATTGGAGTCTAACATAAACCAAATGAAGTTAAAAGATGTTTTTGGGAGTAGTAATGAGGACCTCTTTGGTGATGACT
TTGATGATGTTATGCTCAAAAAGCTTTCTGAACTGTACAAGCTCTGTATTGACCTAGGTAAGTTCACGAAGACAAGTGGT
GTGAGGGAGGACTTGGCTCATTTTGAGGAGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis