Browse Element(s) Details


OsAffx.6389.1.S1_at

Description tigr:9637.m02133
TID=OsAffx.6389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2483011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24820NANA9+14811597..14812622ZF-HD protein dimerisation region containing protein, expressed
LOC_Os09g24830OsAffx.6389.1.S1_at11/119+14820158..14820787hypothetical protein
LOC_Os09g24840Os.48846.1.S1_at9/119+14827980..14829527GAST1 protein precursor, putative, expressed
LOC_Os09g24840OsAffx.27652.1.S1_x_at1/119+14827980..14829527GAST1 protein precursor, putative, expressed
LOC_Os09g24850NANA9+14832051..14838356retrotransposon protein, putative, unclassified, expressed
LOC_Os09g24860OsAffx.17880.1.S1_x_at11/119+14840072..14840437hypothetical protein
LOC_Os09g24870OsAffx.17881.1.S1_at11/119+14843149..14846843hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6389.1.S1_at--550--5431Chr09:14820446..14820470 (25 bp)
GAACCATGGATACCTGAACTCAGCA
LOC_Os09g24830
OsAffx.6389.1.S1_at--224--5171Chr09:14820468..14820492 (25 bp)
GCAAGCAACGGTTCATGTCGATCCA
LOC_Os09g24830
OsAffx.6389.1.S1_at--995--8671Chr09:14820483..14820507 (25 bp)
TGTCGATCCAAAAACCTATCCGTTC
LOC_Os09g24830
OsAffx.6389.1.S1_at--362--10131Chr09:14820499..14820523 (25 bp)
TATCCGTTCCAAACTGACCGAGTTG
LOC_Os09g24830
OsAffx.6389.1.S1_at--1066--8231Chr09:14820513..14820537 (25 bp)
TGACCGAGTTGGCTACACCTACACG
LOC_Os09g24830
OsAffx.6389.1.S1_at--338--9851Chr09:14820532..14820556 (25 bp)
TACACGGTGCGCAACCAAGACGTCA
LOC_Os09g24830
OsAffx.6389.1.S1_at--627--4091Chr09:14820627..14820651 (25 bp)
CGACGTGTAGCTCGCTCAAACGAAT
LOC_Os09g24830
OsAffx.6389.1.S1_at--289--5991Chr09:14820656..14820680 (25 bp)
GAGACAGGATCAGCGGAGCGTTCCC
LOC_Os09g24830
OsAffx.6389.1.S1_at--567--5171Chr09:14820704..14820728 (25 bp)
GCAAGTCCGCAACGTGATACACTGG
LOC_Os09g24830
OsAffx.6389.1.S1_at--949--6451Chr09:14820719..14820743 (25 bp)
GATACACTGGTGCAAAAAGGCTCTG
LOC_Os09g24830
OsAffx.6389.1.S1_at--47--2451Chr09:14820733..14820757 (25 bp)
AAAAGGCTCTGAGCATGATCTCCAA
LOC_Os09g24830
Target Sequence 
GAACCATGGATACCTGAACTCAGCAAGCAACGGTTCATGTCGATCCAAAAACCTATCCGTTCCAAACTGACCGAGTTGGC
TACACCTACACGGTGCGCAACCAAGACGTCACCTGGGCTGGGGCTGGAGCAGGTGCAGGTGCAGGTGAAGGTGAAGAAGA
TGCAGCGTTCGACGGCGGGTGCGACGTGTAGCTCGCTCAAACGAATGGGAGAGACAGGATCAGCGGAGCGTTCCCTGACC
CGGCATTACTGCCCTGCCGCAAGTCCGCAACGTGATACACTGGTGCAAAAAGGCTCTGAGCATGATCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis