Browse Element(s) Details


Os.48846.1.S1_at

Description gb:AK059073.1
DB_XREF= gi:32969091
TID=Os.48846.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H09, full insert sequence.
FL= gb:AK059073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g248409/11GAST1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24820NANA9+14811597..14812622ZF-HD protein dimerisation region containing protein, expressed
LOC_Os09g24830OsAffx.6389.1.S1_at11/119+14820158..14820787hypothetical protein
LOC_Os09g24840Os.48846.1.S1_at9/119+14827980..14829527GAST1 protein precursor, putative, expressed
LOC_Os09g24840OsAffx.27652.1.S1_x_at1/119+14827980..14829527GAST1 protein precursor, putative, expressed
LOC_Os09g24850NANA9+14832051..14838356retrotransposon protein, putative, unclassified, expressed
LOC_Os09g24860OsAffx.17880.1.S1_x_at11/119+14840072..14840437hypothetical protein
LOC_Os09g24870OsAffx.17881.1.S1_at11/119+14843149..14846843hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48846.1.S1_at--970--8471Chr09:14828114..14828138 (25 bp)
TGGCTGGTAGGCTACTTGTCCTCTT
LOC_Os09g24840
Os.48846.1.S1_at--929--8991NONE
TGAAGAGCTATCAGTGCTCGCCGCA
NONE
Os.48846.1.S1_at--269--9971Chr09:14829123..14829147 (25 bp)
TACCGGTGCAGCCAGACGCAGTACA
LOC_Os09g24840
Os.48846.1.S1_at--506--3211Chr09:14829272..14829296 (25 bp)
CAAGTGCCCGTGAAAAAACCTTCAG
LOC_Os09g24840
Os.48846.1.S1_at--279--2371Chr09:14829287..14829311 (25 bp)
AAACCTTCAGTGGACGCTCGAATTC
LOC_Os09g24840
Os.48846.1.S1_at--606--4791Chr09:14829302..14829326 (25 bp)
GCTCGAATTCTTTGGTCATTTCAGT
LOC_Os09g24840
Os.48846.1.S1_at--105--9111Chr09:14829337..14829361 (25 bp)
TGCTCGCACGATGCCGATTGATTCT
LOC_Os09g24840
Os.48846.1.S1_at--652--3391Chr09:14829384..14829408 (25 bp)
CAGCTGTGGCTTCCTATACATTACA
LOC_Os09g24840
Os.48846.1.S1_at--673--9871Chr09:14829429..14829453 (25 bp)
TACATCTGGGCTATCCATTGCTGTA
LOC_Os09g24840
Os.48846.1.S1_at--506--71Chr09:14829445..14829469 (25 bp)
ATTGCTGTACGCCTGAACGGTTCCA
LOC_Os09g24840
Os.48846.1.S1_at--359--1651NONE
ACCACGAAATTCACTCGGTTTGATT
NONE
Target Sequence 
TGGCTGGTAGGCTACTTGTCCTCTTCGCCATTGCTCTCCTTGCCATCTCCATAGCCGAGCACAAGGCGCTANCCAAGGGA
TCAACCAGTGAGCATGATGATAACGTTTACCAAGTAAGCAAGGGAGGACAGGNCAGCCTGAAGAGCTATCAGTGCTCGCC
GCANTGCGCGTACCGGTGCAGCCAGACGCAGTACAAGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCAACGCCTGCC
TCTGCGTGCCGTCGGGCCTCTACGGCAACAAGGGCGAGTGCCCCTGCTACAACAACTGGAAGACCAAGCGCGGNGGCCCC
AAGTGCCCGTGAAAAAACCTTCAGTGGACGCTCGAATTCTTTGGTCATTTCAGTACCCAAANTCTGCTCGCACGATGCCG
ATTGATTCTAGCATGGCCGTCGGGGCAGAGGCAGCTGTGGCTTCCTATACATTACATACACACGGTTGTAAAAATGTACA
TCTGGGCTATCCATTGCTGTACGCCTGAACGGTTCCAGANGGGTGATGCAAATCATGCAGATGCAGNTGTATCGNTACCA
CGAAATTCACTCGGTTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis