Browse Element(s) Details


OsAffx.17880.1.S1_x_at

Description tigr:9637.m02136
TID=OsAffx.17880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2486011/11hypothetical protein
LOC_Os09g245901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24830OsAffx.6389.1.S1_at11/119+14820158..14820787hypothetical protein
LOC_Os09g24840Os.48846.1.S1_at9/119+14827980..14829527GAST1 protein precursor, putative, expressed
LOC_Os09g24840OsAffx.27652.1.S1_x_at1/119+14827980..14829527GAST1 protein precursor, putative, expressed
LOC_Os09g24850NANA9+14832051..14838356retrotransposon protein, putative, unclassified, expressed
LOC_Os09g24860OsAffx.17880.1.S1_x_at11/119+14840072..14840437hypothetical protein
LOC_Os09g24870OsAffx.17881.1.S1_at11/119+14843149..14846843hypothetical protein
LOC_Os09g24880NANA9+14859622..14860185retrotransposon protein, putative, unclassified
LOC_Os09g24890NANA9+14863763..14864002hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17880.1.S1_x_at--1159--4091Chr09:14840256..14840280 (25 bp)
CGAAAGCGAGGGACGTGCAGCTGGT
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--148--4731Chr09:14840275..14840299 (25 bp)
GCTGGTGAAGCTAGTGCGCCGCTAC
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--210--3911Chr09:14840276..14840300 (25 bp)
CTGGTGAAGCTAGTGCGCCGCTACG
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--427--8611Chr09:14840277..14840301 (25 bp)
TGGTGAAGCTAGTGCGCCGCTACGT
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--443--8991Chr09:14840280..14840304 (25 bp)
TGAAGCTAGTGCGCCGCTACGTGCG
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--156--3711Chr09:14840285..14840309 (25 bp)
CTAGTGCGCCGCTACGTGCGGTGGC
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--693--8471Chr09:14840306..14840330 (25 bp)
TGGCGCTCGGTTTTCCAGGCCGGCA
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--157--8391Chr09:14840307..14840331 (25 bp)
GGCGCTCGGTTTTCCAGGCCGGCAT
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--15--4591Chr09:14840308..14840332 (25 bp)
GCGCTCGGTTTTCCAGGCCGGCATC
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--223--9372Chr09:14840342..14840366 (25 bp)
TCGACGGTGGCGGACTACTCGGATC
LOC_Os09g24860
OsAffx.17880.1.S1_x_at--1022--5691Chr09:14840354..14840378 (25 bp)
GACTACTCGGATCCCAAGACCAACA
LOC_Os09g24860
Target Sequence
CGAAAGCGAGGGACGTGCAGCTGGTGAAGCTAGTGCGCCGCTACGTGCGGTGGCGCTCGGTTTTCCAGGCCGGCATCGGG
ATGGTGTCGACGGTGGCGGACTACTCGGATCCCAAGACCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17880.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis