Browse Element(s) Details


Os.25606.1.S1_at

Description gb:AY323479.1
DB_XREF= gi:33087062
GEN=WRKY
TID=Os.25606.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25606 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative wrky protein (WRKY) mRNA, complete cds.
PROD=putative wrky protein
FL= gb:AY323479.1 gb:AK068337.1 gb:AK059966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g250609/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25030NANA9+14956166..14956735hypothetical protein
LOC_Os09g25040OsAffx.17887.1.S1_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.17887.1.S1_x_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.27510.2.S1_x_at1/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25050Os.36403.1.S1_at11/119+14970347..14974374pentatricopeptide, putative, expressed
LOC_Os09g25060Os.25606.1.S1_at9/119+14975022..14976712WRKY DNA binding domain containing protein, expressed
LOC_Os09g25070Os.48082.1.S1_at11/119+14991918..14993887WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25606.1.S1_at--783--10511NONE
TTCACGCTCGGACCTTCACCAAGAA
NONE
Os.25606.1.S1_at--909--4111NONE
CGCTCGGACCTTCACCAAGAACGGG
NONE
Os.25606.1.S1_at--635--3951Chr09:14975533..14975557 (25 bp)
CGGAGTTCCGGACCGCGCTGGTGGA
LOC_Os09g25060
Os.25606.1.S1_at--479--1451Chr09:14975443..14975467 (25 bp)
AGAAGCTGCCCGAATTCTAGCTTCC
LOC_Os09g25060
Os.25606.1.S1_at--211--4191Chr09:14975435..14975459 (25 bp)
CCCGAATTCTAGCTTCCTTTACAAT
LOC_Os09g25060
Os.25606.1.S1_at--691--5671Chr09:14975426..14975450 (25 bp)
TAGCTTCCTTTACAATTCTCCAATT
LOC_Os09g25060
Os.25606.1.S1_at--1094--2231Chr09:14975415..14975439 (25 bp)
ACAATTCTCCAATTCTTCTTACAGG
LOC_Os09g25060
Os.25606.1.S1_at--590--2511Chr09:14975386..14975410 (25 bp)
AACATAGAGGCGCATTTCAATAGAG
LOC_Os09g25060
Os.25606.1.S1_at--965--6211Chr09:14975380..14975404 (25 bp)
GAGGCGCATTTCAATAGAGATTAGA
LOC_Os09g25060
Os.25606.1.S1_at--732--1251Chr09:14975363..14975387 (25 bp)
AGATTAGAGCTTAATCTCCCCCCAA
LOC_Os09g25060
Os.25606.1.S1_at--122--331Chr09:14975325..14975349 (25 bp)
ATACAGGGTAAGAATTCCGAATGCT
LOC_Os09g25060
Target Sequence 
TTCACGCTCGGACCTTCACCAAGAACGGGGGANCCGGTGCAGGTGGTTCGAGGNGGNGCATCCGCCGCCGCCGCCGGACC
TCAAGGAGGTGTGCCGGGAGGTCGCGTCGCCGGAGTTCCGGACCGCGCTGGTGGAGCAGATGGCCAGCGCGCTCACCAGC
GACCCCAAGTTCACCGGCGCGCTCGCCGCGGCGATCCTCCAGAAGCTGCCCGAATTCTAGCTTCCTTTACAATTCTCCAA
TTCTTCTTACAGGAAAAAACATAGAGGCGCATTTCAATAGAGATTAGAGCTTAATCTCCCCCCAAATTTGAAAATTTTAT
ACAGGGTAAGAATTCCGAATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis