Browse Element(s) Details


OsAffx.31078.1.S1_at

Description tigr:9639.m01941
TID=OsAffx.31078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2066011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20610Os.52609.1.S1_at1/1111+11924285..11928849retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20620NANA11+11929106..11930080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20630OsAffx.18962.1.S1_at10/1111+11934921..11935356hypothetical protein
LOC_Os11g20630Os.20212.1.S1_at5/1111+11934921..11935356hypothetical protein
LOC_Os11g20640OsAffx.19542.3.S1_x_at7/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20640OsAffx.21754.1.S1_x_at1/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20650NANA11+11946602..11948046retrotransposon protein, putative, LINE subclass
LOC_Os11g20660OsAffx.31078.1.S1_at11/1111+11950768..11952335hypothetical protein
LOC_Os11g20670Os.7307.3.S1_x_at1/1111+11953647..11954911retrotransposon protein, putative, unclassified
LOC_Os11g20689Os.8896.1.S1_a_at11/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20689Os.50608.1.S1_at11/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20689OsAffx.21235.1.S1_at1/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20710NANA11+11975264..11975976retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31078.1.S1_at--993--7051Chr11:11951389..11951413 (25 bp)
GTAAGGGTGACCATGTCTCGCCAAT
LOC_Os11g20660
OsAffx.31078.1.S1_at--467--9531Chr11:11951236..11951363 (25 bp)
TCTAAGCTCGGTTCCTGATGTCGCT
LOC_Os11g20660
OsAffx.31078.1.S1_at--843--8871Chr11:11951221..11951245 (25 bp)
TGATGTCGCTCTCAACATTGTTGGC
LOC_Os11g20660
OsAffx.31078.1.S1_at--567--6291Chr11:11951172..11951196 (25 bp)
GATGATCTTCGAACCAACCTTGATG
LOC_Os11g20660
OsAffx.31078.1.S1_at--403--2311Chr11:11951009..11951033 (25 bp)
AAAGGCTTCTTGGTCCTCTAATGAT
LOC_Os11g20660
OsAffx.31078.1.S1_at--960--2991Chr11:11950990..11951014 (25 bp)
AATGATGGTAGAGCCGCTGATCCTC
LOC_Os11g20660
OsAffx.31078.1.S1_at--972--8851Chr11:11950973..11950997 (25 bp)
TGATCCTCATGCATCGGTGTTACCA
LOC_Os11g20660
OsAffx.31078.1.S1_at--285--9191Chr11:11950946..11950970 (25 bp)
TGCCACAAACCAGAGTCGCCAAAGT
LOC_Os11g20660
OsAffx.31078.1.S1_at--459--10771Chr11:11950921..11950945 (25 bp)
TTGTTGTCTAGCATTGAACCCCAAA
LOC_Os11g20660
OsAffx.31078.1.S1_at--451--2411Chr11:11950899..11950923 (25 bp)
AAACAACGGTGGGACTCTGGCTCAG
LOC_Os11g20660
OsAffx.31078.1.S1_at--957--7351Chr11:11950833..11950857 (25 bp)
GTGAACACCAGCAATACCCATAGTC
LOC_Os11g20660
Target Sequence 
GTAAGGGTGACCATGTCTCGCCAATGCCAGCCCTGGCCTAGTCAACCACCTCTAAGCTCGGTTCCTGATGTCGCTCTCAA
CATTGTTGGCGCCGTTGGATTTTCCGGTGATGCCGATGATCTTCGAACCAACCTTGATGAAGTCCATGCCAATAAGGTGA
GCGATAGGGGGTTTGGTGAGCTCTTCACCAATGTTGAAGATGCTATGTCAATGCAGTGTGCACGACATAGCCGAAGTGGT
CATTGTGGCCATCTTGCAAGATCAGCTAGAGGCGTAAAAAGGCTTCTTGGTCCTCTAATGATGGTAGAGCCGCTGATCCT
CATGCATCGGTGTTACCATCTGCCACAAACCAGAGTCGCCAAAGTTTGTTGTCTAGCATTGAACCCCAAACAACGGTGGG
ACTCTGGCTCAGGGAACATCAAGGAGATCAAAATTCGTGGTACATGGGTGATAGTGAACACCAGCAATACCCATAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis