Browse Element(s) Details


OsAffx.31123.1.S1_x_at

Description tigr:9639.m02220
TID=OsAffx.31123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2503011/11hypothetical protein
LOC_Os11g2445011/11Mitochondrial carrier protein, expressed
LOC_Os05g117801/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24990NANA11+13728193..13735331retrotransposon protein, putative, unclassified
LOC_Os11g25000Os.47463.1.S1_x_at6/1111+13736537..13740235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25000Os.14491.2.S1_x_at4/1111+13736537..13740235transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25010NANA11+13743306..13746636transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25020OsAffx.7196.1.S1_at11/1111+13748025..13749196uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os11g25030OsAffx.31123.1.S1_x_at11/1111+13750043..13750402hypothetical protein
LOC_Os11g25040OsAffx.19000.1.S1_at11/1111+13767493..13768707uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os11g25050NANA11+13769782..13775137retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31123.1.S1_x_at--211--8652Chr11:13441518..13441542 (25 bp)
TGTGGAAGACGGTGAAGCCCTTCGC
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--779--6152Chr11:13441519..13441543 (25 bp)
GTGGAAGACGGTGAAGCCCTTCGCC
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--898--8512Chr11:13441520..13441544 (25 bp)
TGGAAGACGGTGAAGCCCTTCGCCA
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--531--8192Chr11:13441521..13441545 (25 bp)
GGAAGACGGTGAAGCCCTTCGCCAA
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--313--5372Chr11:13441522..13441546 (25 bp)
GAAGACGGTGAAGCCCTTCGCCAAC
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--1104--2752Chr11:13441523..13441547 (25 bp)
AAGACGGTGAAGCCCTTCGCCAACG
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--647--5752Chr11:13441525..13441549 (25 bp)
GACGGTGAAGCCCTTCGCCAACGGC
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--1044--1912Chr11:13441526..13441550 (25 bp)
ACGGTGAAGCCCTTCGCCAACGGCG
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--345--3972Chr11:13441527..13441551 (25 bp)
CGGTGAAGCCCTTCGCCAACGGCGG
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--731--8392Chr11:13441550..13441574 (25 bp)
GGCGCCTCCGGGATGCTCGCCACCT
LOC_Os11g24450
OsAffx.31123.1.S1_x_at--70--6353Chr11:13441561..13441585 (25 bp)
GATGCTCGCCACCTGCGTCATCCAG
LOC_Os11g24450
Target Sequence 
TGTGGAAGACGGTGAAGCCCTTCGCCAACGGCGGCGCCTCCGGGATGCTCGCCACCTGCGTCATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31123.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis