Browse Element(s) Details


OsAffx.31208.1.S1_at

Description tigr:9639.m02693
TID=OsAffx.31208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2979011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29760OsAffx.19072.1.S1_at11/1111+16766068..16766564hypothetical protein
LOC_Os11g29770OsAffx.31207.1.S1_at11/1111+16770605..16771999Zinc knuckle family protein
LOC_Os11g29780Os.18376.1.S1_at11/1111+16781300..16782677uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g29790OsAffx.31208.1.S1_at11/1111+16788372..16791560Leucine Rich Repeat family protein
LOC_Os11g29800OsAffx.31209.1.S1_at11/1111+16792974..16793385hypothetical protein
LOC_Os11g29810OsAffx.19073.1.S1_x_at11/1111+16796082..16796807hypothetical protein
LOC_Os11g29820NANA11+16805052..16805680hypothetical protein
LOC_Os11g29830OsAffx.31210.1.S1_at11/1111+16813769..16814014hypothetical protein
LOC_Os11g29840Os.27186.1.S1_at11/1111+16816190..16821713expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31208.1.S1_at--774--9211Chr11:16790882..16790906 (25 bp)
TCCACCCATAGTTCACTGTGACTTG
LOC_Os11g29790
OsAffx.31208.1.S1_at--87--2951Chr11:16791145..16791169 (25 bp)
AAGGCGGGCAAGTTTCTCCCTGTGG
LOC_Os11g29790
OsAffx.31208.1.S1_at--640--9311Chr11:16791161..16791185 (25 bp)
TCCCTGTGGAGACGCGTACAGCTTT
LOC_Os11g29790
OsAffx.31208.1.S1_at--23--1571Chr11:16791180..16791204 (25 bp)
AGCTTTGGAATTGTCATCCTCGAGC
LOC_Os11g29790
OsAffx.31208.1.S1_at--218--7131Chr11:16791192..16791216 (25 bp)
GTCATCCTCGAGCTGTTTACAGGCA
LOC_Os11g29790
OsAffx.31208.1.S1_at--400--6831Chr11:16791206..16791230 (25 bp)
GTTTACAGGCATGGTACCTACTCAT
LOC_Os11g29790
OsAffx.31208.1.S1_at--1020--6251Chr11:16791243..16791267 (25 bp)
GATGGGTTAACCTTGCAGAAGCATG
LOC_Os11g29790
OsAffx.31208.1.S1_at--514--4951Chr11:16791263..16791287 (25 bp)
GCATGTCAAGAACGTATTTCCAGGA
LOC_Os11g29790
OsAffx.31208.1.S1_at--1126--10811Chr11:16791301..16791325 (25 bp)
TTGTCGATCCAATACTACTGTCTAT
LOC_Os11g29790
OsAffx.31208.1.S1_at--234--8991Chr11:16791379..16791403 (25 bp)
TGAACCATGCCATATTGTCTATCAT
LOC_Os11g29790
OsAffx.31208.1.S1_at--946--5051Chr11:16791462..16791486 (25 bp)
GCAGCAGCAGATTTGCGCAGGGTAA
LOC_Os11g29790
Target Sequence 
TCCACCCATAGTTCACTGTGACTTGAAGCCAAGTAACATTCTTCTTGATGAAGATTTAGTTGCTCATGTTGGTGACTTCG
GCCTTGCAAAGATTCTTGCTGATTCAGAAGGTGAACAACCGATTAATTCAAAGAGCTCTATTGGAATACGAGGAACGATT
GGATATGTCGCTCCAGAGTATGGGGAAGGCGGGCAAGTTTCTCCCTGTGGAGACGCGTACAGCTTTGGAATTGTCATCCT
CGAGCTGTTTACAGGCATGGTACCTACTCATGACATGTTCAGAGATGGGTTAACCTTGCAGAAGCATGTCAAGAACGTAT
TTCCAGGAATTCTTATGAAGATTGTCGATCCAATACTACTGTCTATTGAAGGAGTTTATACAAGTAATTTGCCCCCTGGA
AGAAATGCAATGGAACATATGAACCATGCCATATTGTCTATCATGAAAATAGCTCTCTCATGCAGCAGACAGGCACCAAC
AGAGAGGATGAGGATCAGAGATGCAGCAGCAGATTTGCGCAGGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis