Browse Element(s) Details


OsAffx.31209.1.S1_at

Description tigr:9639.m02694
TID=OsAffx.31209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2980011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29770OsAffx.31207.1.S1_at11/1111+16770605..16771999Zinc knuckle family protein
LOC_Os11g29780Os.18376.1.S1_at11/1111+16781300..16782677uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g29790OsAffx.31208.1.S1_at11/1111+16788372..16791560Leucine Rich Repeat family protein
LOC_Os11g29800OsAffx.31209.1.S1_at11/1111+16792974..16793385hypothetical protein
LOC_Os11g29810OsAffx.19073.1.S1_x_at11/1111+16796082..16796807hypothetical protein
LOC_Os11g29820NANA11+16805052..16805680hypothetical protein
LOC_Os11g29830OsAffx.31210.1.S1_at11/1111+16813769..16814014hypothetical protein
LOC_Os11g29840Os.27186.1.S1_at11/1111+16816190..16821713expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31209.1.S1_at--37--7151Chr11:16793332..16793355 (24 bp)
GTCTTCTCGGTTGATCCGATCCGTA
LOC_Os11g29800
OsAffx.31209.1.S1_at--599--7911Chr11:16793133..16793347 (25 bp)
GGTTGATCCGATCCGTAATCCCTTC
LOC_Os11g29800
OsAffx.31209.1.S1_at--558--6291Chr11:16793124..16793338 (25 bp)
GATCCGTAATCCCTTCTGGAAAGTT
LOC_Os11g29800
OsAffx.31209.1.S1_at--260--9731Chr11:16793118..16793142 (25 bp)
TAATCCCTTCTGGAAAGTTGAAATT
LOC_Os11g29800
OsAffx.31209.1.S1_at--39--6651Chr11:16793102..16793126 (25 bp)
GTTGAAATTATAAACTTCCAGTTGA
LOC_Os11g29800
OsAffx.31209.1.S1_at--930--3631Chr11:16793088..16793112 (25 bp)
CTTCCAGTTGAATATGAGACAGCCA
LOC_Os11g29800
OsAffx.31209.1.S1_at--783--1231Chr11:16793083..16793107 (25 bp)
AGTTGAATATGAGACAGCCAGCTGC
LOC_Os11g29800
OsAffx.31209.1.S1_at--741--4531Chr11:16793060..16793084 (25 bp)
GCCCAGCTACGTCTTCCTGCTGGAA
LOC_Os11g29800
OsAffx.31209.1.S1_at--507--9271Chr11:16793046..16793070 (25 bp)
TCCTGCTGGAATGCGTGGATATTCT
LOC_Os11g29800
OsAffx.31209.1.S1_at--1031--7931Chr11:16793030..16793054 (25 bp)
GGATATTCTGTTGCAGCAGAAGAGG
LOC_Os11g29800
OsAffx.31209.1.S1_at--1016--7631Chr11:16793006..16793030 (25 bp)
GGGAGGACTAGACAAAAGCAATATT
LOC_Os11g29800
Target Sequence 
GTCTTCTCGGTTGATCCGATCCGTAATCCCTTCTGGAAAGTTGAAATTATAAACTTCCAGTTGAATATGAGACAGCCAGC
TGCCCAGCTACGTCTTCCTGCTGGAATGCGTGGATATTCTGTTGCAGCAGAAGAGGGGAGGACTAGACAAAAGCAATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis