Browse Element(s) Details


OsAffx.31398.1.S1_at

Description tigr:9639.m03644
TID=OsAffx.31398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3991010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39870Os.46314.2.S1_x_at2/1111+23262725..23268858retrotransposon protein, putative, unclassified
LOC_Os11g39880NANA11+23271211..23273188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39890NANA11+23274522..23275732retrotransposon protein, putative, unclassified
LOC_Os11g39900NANA11+23276356..23279647retrotransposon protein, putative, unclassified
LOC_Os11g39910OsAffx.31398.1.S1_at10/1111+23286579..23287444hypothetical protein
LOC_Os11g39920OsAffx.19263.1.S1_at11/1111+23290653..23294477expressed protein
LOC_Os11g39929NANA11+23294732..23295345NA
LOC_Os11g39940NANA11+23297256..23299466hAT family dimerisation domain containing protein
LOC_Os11g39950OsAffx.22385.1.S1_x_at4/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39950OsAffx.20329.1.S1_at2/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39950Os.46862.1.S1_at1/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31398.1.S1_at--97--10711Chr11:23286613..23286636 (24 bp)
TTGCCCTTGTGGTGCAGTGCTCAGA
LOC_Os11g39910
OsAffx.31398.1.S1_at--286--9051NONE
TGCAGTGCTCAGATATGGCGAGGAA
NONE
OsAffx.31398.1.S1_at--284--6451Chr11:23287237..23287261 (25 bp)
GATAATGGCAGATGAAGAACCCTCA
LOC_Os11g39910
OsAffx.31398.1.S1_at--818--2811Chr11:23287275..23287299 (25 bp)
AAGATTCGTCGTGCGGATCTATCGT
LOC_Os11g39910
OsAffx.31398.1.S1_at--303--6411Chr11:23287290..23287314 (25 bp)
GATCTATCGTCAATCCAGGGCCGTG
LOC_Os11g39910
OsAffx.31398.1.S1_at--694--2591Chr11:23287301..23287325 (25 bp)
AATCCAGGGCCGTGTTTTCCATCGT
LOC_Os11g39910
OsAffx.31398.1.S1_at--277--4252Chr11:23287310..23287334 (25 bp)
CCGTGTTTTCCATCGTCGTGCAAAA
LOC_Os11g39910
OsAffx.31398.1.S1_at--142--3551Chr11:23287320..23287344 (25 bp)
CATCGTCGTGCAAAACTTACTGTAA
LOC_Os11g39910
OsAffx.31398.1.S1_at--627--2371Chr11:23287360..23287384 (25 bp)
AAACGCTGATGGCAACTGTACGCCT
LOC_Os11g39910
OsAffx.31398.1.S1_at--22--2571Chr11:23287373..23287397 (25 bp)
AACTGTACGCCTGACGGATGCAAGT
LOC_Os11g39910
OsAffx.31398.1.S1_at--620--1931Chr11:23287386..23287410 (25 bp)
ACGGATGCAAGTGCACCTACTGCTT
LOC_Os11g39910
Target Sequence 
TTGCCCTTGTGGTGCAGTGCTCAGATATGGCGAGGAAGGTGATAATGGCAGATGAAGAACCCTCATCGACGAACCCCCAA
GATTCGTCGTGCGGATCTATCGTCAATCCAGGGCCGTGTTTTCCATCGTCGTGCAAAACTTACTGTAAAATCCAGGTTCC
CCCAAACGCTGATGGCAACTGTACGCCTGACGGATGCAAGTGCACCTACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis