Browse Element(s) Details


OsAffx.31412.1.S1_at

Description tigr:9639.m03745
TID=OsAffx.31412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=leucine rich repeat containing protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4084011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40800Os.53035.1.S1_at11/1111+23913298..23914447expressed protein
LOC_Os11g40810OsAffx.19285.1.S1_at11/1111+23920279..23923178Leucine Rich Repeat family protein, expressed
LOC_Os11g40820NANA11+23923929..23930062retrotransposon protein, putative, unclassified
LOC_Os11g40830NANA11+23930688..23933949retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40840OsAffx.31412.1.S1_at11/1111+23935674..23936927Leucine Rich Repeat family protein
LOC_Os11g40850OsAffx.31413.1.S1_at10/1111+23938172..23939075expressed protein
LOC_Os11g40860NANA11+23939973..23944370retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g40870OsAffx.31414.1.S1_at11/1111+23947866..23950581hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31412.1.S1_at--692--5491Chr11:23936215..23936239 (25 bp)
GAACATCATTGTCCATGGTTGTCCT
LOC_Os11g40840
OsAffx.31412.1.S1_at--1062--7911Chr11:23936199..23936223 (25 bp)
GGTTGTCCTTGCATATAACAGCCTA
LOC_Os11g40840
OsAffx.31412.1.S1_at--719--7851Chr11:23936171..23936195 (25 bp)
GGTAGTATTCCACCTATCTTAGCGA
LOC_Os11g40840
OsAffx.31412.1.S1_at--693--71Chr11:23936146..23936170 (25 bp)
ATTGCTCATCACTCAGATACCTTGA
LOC_Os11g40840
OsAffx.31412.1.S1_at--134--9531Chr11:23936066..23936090 (25 bp)
TCTCTTCTTTCCTTAGATCTCTCAA
LOC_Os11g40840
OsAffx.31412.1.S1_at--396--10551Chr11:23936033..23936057 (25 bp)
TTCATTAGATGGTCAATCCCCTCTG
LOC_Os11g40840
OsAffx.31412.1.S1_at--293--4051Chr11:23935990..23936014 (25 bp)
CGATTCTGCATGTCATCCTTACAAA
LOC_Os11g40840
OsAffx.31412.1.S1_at--336--5591Chr11:23935930..23935954 (25 bp)
GAAATCTGAGTTCCCTATCTTCCTT
LOC_Os11g40840
OsAffx.31412.1.S1_at--831--4291Chr11:23935917..23935941 (25 bp)
CCTATCTTCCTTGTTAGTTGCTCAA
LOC_Os11g40840
OsAffx.31412.1.S1_at--449--3111Chr11:23935817..23935841 (25 bp)
AATTTGACCGGCACAGTTCCACCAT
LOC_Os11g40840
OsAffx.31412.1.S1_at--626--9351Chr11:23935778..23935802 (25 bp)
TCGACTTTGACTTATCTTGGCCTAG
LOC_Os11g40840
Target Sequence 
GAACATCATTGTCCATGGTTGTCCTTGCATATAACAGCCTAACTGGTAGTATTCCACCTATCTTAGCGAATTGCTCATCA
CTCAGATACCTTGACCTGTCACAAAATAAACTTGGTGGGGTAATCCCTTCTGCCCTCTTCAACAGCTCATCTCTTCTTTC
CTTAGATCTCTCAAGTAATAACTTCATTAGATGGTCAATCCCCTCTGCCCCACTGATATCCGCACCGATTCTGCATGTCA
TCCTTACAAACAACACAATCTTTGGAGGTATTCCAGCTGCATTGGGAAATCTGAGTTCCCTATCTTCCTTGTTAGTTGCT
CAAAACAACCTACAAGGAAATATCCCAGATAGCATAACCAAAATTCCATATTTACAAGAATTAGACTTGGCTTATAACAA
TTTGACCGGCACAGTTCCACCATCTCTTTACACAATCTCGACTTTGACTTATCTTGGCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis