Browse Element(s) Details


OsAffx.31414.1.S1_at

Description tigr:9639.m03748
TID=OsAffx.31414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4087011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40810OsAffx.19285.1.S1_at11/1111+23920279..23923178Leucine Rich Repeat family protein, expressed
LOC_Os11g40820NANA11+23923929..23930062retrotransposon protein, putative, unclassified
LOC_Os11g40830NANA11+23930688..23933949retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40840OsAffx.31412.1.S1_at11/1111+23935674..23936927Leucine Rich Repeat family protein
LOC_Os11g40850OsAffx.31413.1.S1_at10/1111+23938172..23939075expressed protein
LOC_Os11g40860NANA11+23939973..23944370retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g40870OsAffx.31414.1.S1_at11/1111+23947866..23950581hypothetical protein
LOC_Os11g40890OsAffx.7369.1.S1_at11/1111+23975225..23979516Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31414.1.S1_at--1034--6311Chr11:23947920..23947944 (25 bp)
GATGAAGCCGCAACACCGTCAGCAA
LOC_Os11g40870
OsAffx.31414.1.S1_at--1112--5031Chr11:23947952..23947976 (25 bp)
GCAGATGCAGTTGTCGATTCAGGCT
LOC_Os11g40870
OsAffx.31414.1.S1_at--8--8711Chr11:23947963..23947987 (25 bp)
TGTCGATTCAGGCTGCAACAGGCAG
LOC_Os11g40870
OsAffx.31414.1.S1_at--93--9031Chr11:23947976..23948000 (25 bp)
TGCAACAGGCAGACGAGGGCGTCCT
LOC_Os11g40870
OsAffx.31414.1.S1_at--686--3171Chr11:23950127..23950151 (25 bp)
AATTGGATACGCATTTGGCACTGTT
LOC_Os11g40870
OsAffx.31414.1.S1_at--457--3331Chr11:23950145..23950169 (25 bp)
CACTGTTCAAGTTAAGCTACGATAT
LOC_Os11g40870
OsAffx.31414.1.S1_at--1130--9931Chr11:23950162..23950183 (22 bp)
TACGATATGACGAAGTGACCAGCTT
LOC_Os11g40870
OsAffx.31414.1.S1_at--374--10551Chr11:23950399..23950423 (25 bp)
TTCATCACCTCTAGAGTCGGAACCC
LOC_Os11g40870
OsAffx.31414.1.S1_at--1130--2112Chr11:23950430..23950454 (25 bp)
ACAGTTTTAGCTCCATATCTGAAAT
LOC_Os11g40870
OsAffx.31414.1.S1_at--1083--931Chr11:23950473..23950497 (25 bp)
AGGAATCTCTATAACTCTACTCCAG
LOC_Os11g40870
OsAffx.31414.1.S1_at--867--9811Chr11:23950527..23950551 (25 bp)
TAAAGCTCTACCAAATAGTCCCGAA
LOC_Os11g40870
Target Sequence 
GATGAAGCCGCAACACCGTCAGCAAACGAAGGGCAGATGCAGTTGTCGATTCAGGCTGCAACAGGCAGACGAGGGCGTCC
TCCTTTCATCCCCCATTGCGATGGAAATCCTCCAATTGGATACGCATTTGGCACTGTTCAAGTTAAGCTACGATATGACG
AAGTGACCAGCTTCAGCTCCAGCTTCATCACCTCTAGAGTCGGAACCCAACCAAACAGTTTTAGCTCCATATCTGAAATG
GGAGCAGAGCTGGGTTTAGGAATCTCTATAACTCTACTCCAGACTCAACTCCTAAAGCTAAATTTAGGAGTTAAAGCTCT
ACCAAATAGTCCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis