Browse Element(s) Details


OsAffx.7369.1.S1_at

Description tigr:9639.m03750
TID=OsAffx.7369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4089011/11Leucine Rich Repeat family protein, expressed
LOC_Os11g411001/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40870OsAffx.31414.1.S1_at11/1111+23947866..23950581hypothetical protein
LOC_Os11g40890OsAffx.7369.1.S1_at11/1111+23975225..23979516Leucine Rich Repeat family protein, expressed
LOC_Os11g40900OsAffx.31415.2.S1_s_at11/1111+23984119..23985325hypothetical protein
LOC_Os11g40910OsAffx.19287.2.S1_s_at11/1111+23985841..23987812hypothetical protein
LOC_Os11g40920OsAffx.30966.3.A1_x_at11/1111+23988896..23998405AT hook motif-containing protein, putative
LOC_Os11g40930Os.51531.1.S1_at10/1111+24002891..24003612expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7369.1.S1_at--743--2731Chr11:23976063..23976087 (25 bp)
AAGAATCGCCGTAGACATTGCCGTG
LOC_Os11g40890
OsAffx.7369.1.S1_at--461--71Chr11:23976047..23976071 (25 bp)
ATTGCCGTGGCTTTAGACTATCTTC
LOC_Os11g40890
OsAffx.7369.1.S1_at--20--5711Chr11:23976032..23976056 (25 bp)
GACTATCTTCACAATCGATGCTCTC
LOC_Os11g40890
OsAffx.7369.1.S1_at--194--6351Chr11:23976016..23976040 (25 bp)
GATGCTCTCCTCCTATGGTTCATTG
LOC_Os11g40890
OsAffx.7369.1.S1_at--178--4991Chr11:23975948..23975972 (25 bp)
GCATGTCTTAGTGACTTTGGACTTA
LOC_Os11g40890
OsAffx.7369.1.S1_at--753--3331Chr11:23975877..23975901 (25 bp)
CACTGCTGGACTGAGAGGATCAATT
LOC_Os11g40890
OsAffx.7369.1.S1_at--409--8151Chr11:23975611..23975635 (25 bp)
GGAAAGTGCCCAACCGATGAGATGT
LOC_Os11g40890
OsAffx.7369.1.S1_at--1087--7991Chr11:23975582..23975606 (25 bp)
GGATGGCATGAACCTTCGTAGCTTA
LOC_Os11g40890
OsAffx.7369.1.S1_at--1031--10011Chr11:23975520..23975544 (25 bp)
TAGAACCTACTATCACCGAACATCA
LOC_Os11g40890
OsAffx.7369.1.S1_at--659--5491Chr11:23975503..23975527 (25 bp)
GAACATCACGATGGCGAAGACTCAA
LOC_Os11g40890
OsAffx.7369.1.S1_at--414--3572Chr11:24118103..24118122 (20 bp)
CATACAGCTGGCTAAGCTTGGGTTA
LOC_Os11g41100
Target Sequence 
AAGAATCGCCGTAGACATTGCCGTGGCTTTAGACTATCTTCACAATCGATGCTCTCCTCCTATGGTTCATTGCGATCTGA
AACCAAGCAATGTCCTTTTAGATGATGAAATGGTTGCATGTCTTAGTGACTTTGGACTTACAAAGTTTCTTCATAACAAC
ATTATAAGCCTAAACAATTCATCAAGCACTGCTGGACTGAGAGGATCAATTGGATATATTGCTCCAGAGTATGGCTTGGG
GTGCAAGGTCTCAACTGAGGGTGATGTATACAGTTATGGAATTATTGTTCTAGAGATGATCACAGGAAAGTGCCCAACCG
ATGAGATGTTTAAGGATGGCATGAACCTTCGTAGCTTAGTGGAATCAGCATTTCCACATAAGATCAATGATATTTTAGAA
CCTACTATCACCGAACATCACGATGGCGAAGACTCAAATCATGTTGTGCCTGAAATTCTAACATGTGCCATACAGCTGGC
TAAGCTTGGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis