Browse Element(s) Details


OsAffx.31427.1.S1_at

Description tigr:9639.m03797
TID=OsAffx.31427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4133011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41310OsAffx.7374.1.S1_at11/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.31424.1.S1_x_at1/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41320OsAffx.31426.1.S1_at10/1111+24278979..24280090hypothetical protein
LOC_Os11g41330OsAffx.31427.1.S1_at11/1111+24283560..24283802hypothetical protein
LOC_Os11g41350OsAffx.19299.1.S1_x_at11/1111+24308286..24309464BTB/POZ domain containing protein
LOC_Os11g41350OsAffx.19299.1.S1_at11/1111+24308286..24309464BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31427.1.S1_at--773--3231Chr11:24283746..24283770 (25 bp)
CAAGCTAGTTAGGAGGCGGGCCGGT
LOC_Os11g41330
OsAffx.31427.1.S1_at--915--7311Chr11:24283707..24283731 (25 bp)
GTGCTTCACATTGCTAGACCTGAAG
LOC_Os11g41330
OsAffx.31427.1.S1_at--847--3311Chr11:24283701..24283725 (25 bp)
CACATTGCTAGACCTGAAGAAGAAG
LOC_Os11g41330
OsAffx.31427.1.S1_at--491--971Chr11:24283642..24283666 (25 bp)
AGGAGCCAGTCCAGCGGGCTTTGCC
LOC_Os11g41330
OsAffx.31427.1.S1_at--880--1131Chr11:24283635..24283659 (25 bp)
AGTCCAGCGGGCTTTGCCGGTGCCT
LOC_Os11g41330
OsAffx.31427.1.S1_at--891--9171Chr11:24283621..24283645 (25 bp)
TGCCGGTGCCTTTCACGTTTTTCGG
LOC_Os11g41330
OsAffx.31427.1.S1_at--1034--10291Chr11:24283611..24283635 (25 bp)
TTTCACGTTTTTCGGCCAGCTGGGA
LOC_Os11g41330
OsAffx.31427.1.S1_at--96--10391Chr11:24283603..24283627 (25 bp)
TTTTCGGCCAGCTGGGATTCCACAA
LOC_Os11g41330
OsAffx.31427.1.S1_at--306--8451Chr11:24283598..24283622 (25 bp)
GGCCAGCTGGGATTCCACAACGAAG
LOC_Os11g41330
OsAffx.31427.1.S1_at--1107--1611Chr11:24283594..24283618 (25 bp)
AGCTGGGATTCCACAACGAAGTGAT
LOC_Os11g41330
OsAffx.31427.1.S1_at--309--7671Chr11:24283590..24283614 (25 bp)
GGGATTCCACAACGAAGTGATACAA
LOC_Os11g41330
Target Sequence 
CAAGCTAGTTAGGAGGCGGGCCGGTGGAGGCCCGCGCGGGTGCTTCACATTGCTAGACCTGAAGAAGAAGGTTGGAGGGG
GGATGGGGAGGGAGGATGTGGGTGAGGAGCCAGTCCAGCGGGCTTTGCCGGTGCCTTTCACGTTTTTCGGCCAGCTGGGA
TTCCACAACGAAGTGATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis