Browse Element(s) Details


OsAffx.31440.1.S1_at

Description tigr:9639.m03912
TID=OsAffx.31440.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4245011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42420Os.8764.1.A1_a_at11/1111+25026877..25035897Nuclear pore protein 84/107 containing protein, expressed
LOC_Os11g42430OsAffx.19332.1.S1_at11/1111+25035988..25039028Sugar transporter family protein, expressed
LOC_Os11g42440OsAffx.19333.1.S1_at11/1111+25041385..25046180Protein kinase domain containing protein, expressed
LOC_Os11g42450OsAffx.31440.1.S1_at11/1111+25050757..25051950Leucine Rich Repeat family protein, expressed
LOC_Os11g42459NANA11+25066871..25067641NA

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009411biological_processresponse to UV
GO:0009650biological_processUV protection
GO:0042221biological_processresponse to chemical stimulus
GO:0042493biological_processresponse to drug
GO:0009507cellular_componentchloroplast
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31440.1.S1_at--463--911Chr11:25051468..25051492 (25 bp)
AGGCTCCCGAGGCTCTCGTTCCTTG
LOC_Os11g42450
OsAffx.31440.1.S1_at--24--9511Chr11:25051481..25051505 (25 bp)
TCTCGTTCCTTGACCTCGGCGGCAA
LOC_Os11g42450
OsAffx.31440.1.S1_at--538--6151Chr11:25051519..25051543 (25 bp)
GAGGTCCCCGGCGAGGTGTTCTCCT
LOC_Os11g42450
OsAffx.31440.1.S1_at--652--4611Chr11:25051529..25051553 (25 bp)
GCGAGGTGTTCTCCTTCCGGATCAG
LOC_Os11g42450
OsAffx.31440.1.S1_at--614--7951Chr11:25051547..25051571 (25 bp)
GGATCAGCTACCTGCAGCTCCGCAA
LOC_Os11g42450
OsAffx.31440.1.S1_at--1107--1551Chr11:25051552..25051576 (25 bp)
AGCTACCTGCAGCTCCGCAAGAACG
LOC_Os11g42450
OsAffx.31440.1.S1_at--175--3231Chr11:25051569..25051593 (25 bp)
CAAGAACGCGTTCTCGGGCGAGCTC
LOC_Os11g42450
OsAffx.31440.1.S1_at--515--5451Chr11:25051698..25051722 (25 bp)
GAACGGGAACAAGTTCGCCGGCCAG
LOC_Os11g42450
OsAffx.31440.1.S1_at--845--4251Chr11:25051758..25051782 (25 bp)
CCGGATGCGGGTGCTCTTCTTGCAG
LOC_Os11g42450
OsAffx.31440.1.S1_at--1067--2511Chr11:25051786..25051810 (25 bp)
AACTTCCTGACCGGCATCGGCGTGG
LOC_Os11g42450
OsAffx.31440.1.S1_at--1140--8691Chr11:25051835..25051859 (25 bp)
TGTGCGCGCACATGAACTGCGTGGC
LOC_Os11g42450
Target Sequence 
AGGCTCCCGAGGCTCTCGTTCCTTGACCTCGGCGGCAACTGGTTCTCCGGCGAGGTCCCCGGCGAGGTGTTCTCCTTCCG
GATCAGCTACCTGCAGCTCCGCAAGAACGCGTTCTCGGGCGAGCTCCGGCCATCGGGGCGGGTGCCAGCCGGCGCCACGG
TGGACCTCAGCCACAACGCGCTGTCCGGGCGCGTCCCCGCCGAGCTGGCGCCGGCGGCGGCGGTGTACCTGAACGGGAAC
AAGTTCGCCGGCCAGGTGCCGCGGGAGATCGCCGCGGCGGCGGAGGGCGGCCGGATGCGGGTGCTCTTCTTGCAGGACAA
CTTCCTGACCGGCATCGGCGTGGGCGGCGTCCCGGCGAGCGCCGCCGTGTGCGCGCACATGAACTGCGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis