Browse Element(s) Details


OsAffx.31455.1.S1_at

Description tigr:9639.m04000
TID=OsAffx.31455.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4331010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43280NANA11+25603617..25604795transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43290NANA11+25607833..25613674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43300NANA11+25615289..25617187retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43310OsAffx.31455.1.S1_at10/1111+25629486..25631157hypothetical protein
LOC_Os11g43320OsAffx.19352.1.S1_at1/1111+25633493..25636276NB-ARC domain containing protein, expressed
LOC_Os11g43330OsAffx.4416.1.S1_at2/1111+25642148..25644966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43330Os.46986.1.S1_at1/1111+25642148..25644966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43340OsAffx.7395.1.S1_at11/1111+25652904..25654516hypothetical protein
LOC_Os11g43350OsAffx.25962.1.S1_at11/1111+25655683..25661428transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31455.1.S1_at--714--5631Chr11:25631080..25631104 (25 bp)
GACACCGCCGCCTAGGGAGGAAACT
LOC_Os11g43310
OsAffx.31455.1.S1_at--390--4511Chr11:25631074..25631098 (25 bp)
GCCGCCTAGGGAGGAAACTCGTCGA
LOC_Os11g43310
OsAffx.31455.1.S1_at--952--9331NONE
TCGCTTCTTCGTCGCAAAGAAGGGA
NONE
OsAffx.31455.1.S1_at--932--6011Chr11:25629788..25629812 (25 bp)
GAGAGAGGCTCTACATCATAACCAT
LOC_Os11g43310
OsAffx.31455.1.S1_at--10--8331Chr11:25629782..25629806 (25 bp)
GGCTCTACATCATAACCATTGTATT
LOC_Os11g43310
OsAffx.31455.1.S1_at--126--2871Chr11:25629585..25629608 (24 bp)
AAGTGTTGACGTAGAATCGCGCCGT
LOC_Os11g43310
OsAffx.31455.1.S1_at--50--3051Chr11:25629571..25629595 (25 bp)
AATCGCGCCGTCACACTTTGAGCAT
LOC_Os11g43310
OsAffx.31455.1.S1_at--629--10774Chr02:14044446..14044467 (22 bp)
TTGAGCATGTTATGTGCAACCCGCT
NONE
OsAffx.31455.1.S1_at--404--8771Chr11:25629547..25629571 (25 bp)
TGTTATGTGCAACCCGCTACGGTAC
LOC_Os11g43310
OsAffx.31455.1.S1_at--744--4851Chr11:25629532..25629556 (25 bp)
GCTACGGTACCCAAAGACGCATCGC
LOC_Os11g43310
OsAffx.31455.1.S1_at--781--1391Chr11:25629518..25629542 (25 bp)
AGACGCATCGCCATAGGAGAGGGTA
LOC_Os11g43310
Target Sequence 
GACACCGCCGCCTAGGGAGGAAACTCGTCGAAGAGGGGGACAAGCGGTGGCGGGGTCGCTTCTTCGTCGCAAAGAAGGGA
GAGAGGCTCTACATCATAACCATTGTATTATAATGGTGTGTCAAGAGGATACAAGTGTTGACGTAGAATCGCGCCGTCAC
ACTTTGAGCATGTTATGTGCAACCCGCTACGGTACCCAAAGACGCATCGCCATAGGAGAGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis