Browse Element(s) Details


OsAffx.19352.1.S1_at

Description tigr:9639.m04012
TID=OsAffx.19352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4341011/11NB-ARC domain containing protein, expressed
LOC_Os11g433201/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43380OsAffx.21897.5.S1_x_at4/1111+25681064..25684004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43390Os.49941.1.S1_at11/1111+25688350..25691231expressed protein
LOC_Os11g43400Os.20602.2.S1_x_at9/1111+25693857..25695935hAT family dimerisation domain containing protein
LOC_Os11g43404Os.32717.1.S1_at11/1111+25696774..25699226expressed protein
LOC_Os11g43404Os.51236.1.S1_x_at1/1111+25696774..25699226expressed protein
LOC_Os11g43410OsAffx.19352.1.S1_at11/1111+25706256..25708996NB-ARC domain containing protein, expressed
LOC_Os11g43420Os.53698.1.S1_at8/1111+25710912..25713973NB-ARC domain containing protein, expressed
LOC_Os11g43430Os.14491.2.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43430Os.47463.1.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43440NANA11+25727431..25728051hypothetical protein
LOC_Os11g43450NANA11+25729552..25732285transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19352.1.S1_at--45--2291Chr11:25708427..25708451 (25 bp)
AAATGCCTACGATCTTTGTCAGTCC
LOC_Os11g43410
OsAffx.19352.1.S1_at--990--7111Chr11:25708444..25708468 (25 bp)
GTCAGTCCAGATTAGATCACCTTCT
LOC_Os11g43410
OsAffx.19352.1.S1_at--937--5111Chr11:25708512..25708536 (25 bp)
GCACATACCCGAGGCTTCTTGAGAG
LOC_Os11g43410
OsAffx.19352.1.S1_at--647--3271Chr11:25708555..25708579 (25 bp)
CAAAAGTGGATTGCCTCCCTGGATT
LOC_Os11g43410
OsAffx.19352.1.S1_at--978--1332Chr11:25708632..25708656 (25 bp)
AGAGTGCTATCCATGTCCTGGGCAA
LOC_Os11g43410
OsAffx.19352.1.S1_at--612--7591Chr11:25708663..25708687 (25 bp)
GGGCTTGTGCTATCTTAGGCTCCGA
LOC_Os11g43410
OsAffx.19352.1.S1_at--505--5631Chr11:25708686..25708710 (25 bp)
GACACAGGTCATACATCCGAGGCGA
LOC_Os11g43410
OsAffx.19352.1.S1_at--799--5831Chr11:25708709..25708733 (25 bp)
GACCTCACCATCTCTACAAGGGAAT
LOC_Os11g43410
OsAffx.19352.1.S1_at--425--1011Chr11:25708745..25708769 (25 bp)
AGGTTCCTTTTCATTGAGGGCCCAG
LOC_Os11g43410
OsAffx.19352.1.S1_at--506--7871Chr11:25708843..25708867 (25 bp)
GGTTTCTCTTGTTGGGATTGGTCAC
LOC_Os11g43410
OsAffx.19352.1.S1_at--943--7711Chr11:25708923..25708947 (25 bp)
GGGTGATTCTCCGTGACATCAAAGC
LOC_Os11g43410
Target Sequence 
AAATGCCTACGATCTTTGTCAGTCCAGATTAGATCACCTTCTGCTGCTGATGGAAGCAATGGCTTTGACATGAGCATGAT
GTACAGCACATACCCGAGGCTTCTTGAGAGCCTGACCATCTGTGGCATCAAAAGTGGATTGCCTCCCTGGATTGAACATC
TCCACCAACTTACTAAGGTTACTCTGCATAATACCTCCCTGACAGAGAGTGCTATCCATGTCCTGGGCAAGCTCGTGGGC
TTGTGCTATCTTAGGCTCCGACACAGGTCATACATCCGAGGCGACCTCACCATCTCTACAAGGGAATTCAAAAACCTCAG
GTTCCTTTTCATTGAGGGCCCAGACATTGTCAACATCAGTTTCGATGAGGGTGCAGCTCCTAGGCTTGAGAGGATGGTCT
GGCGTTTCACGAGAATGGTTTCTCTTGTTGGGATTGGTCACATCCTAAGCATCAGGGAGCTCGAGCTTGAAGGAGACAGT
GACCTGGAGAAGATTGGGGTGATTCTCCGTGACATCAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis