Browse Element(s) Details


OsAffx.31500.1.S1_at

Description tigr:9639.m04263
TID=OsAffx.31500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4576011/11NB-ARC domain containing protein, expressed
LOC_Os11g457902/11NB-ARC domain containing protein, expressed
LOC_Os05g133001/11Helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45740Os.2867.1.A1_at11/1111+27163514..27166514expressed protein
LOC_Os11g45750Os.50411.2.S1_x_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.1.S1_at11/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45750Os.50411.2.S1_at10/1111+27176833..27188263NB-ARC domain containing protein, expressed
LOC_Os11g45760OsAffx.31500.1.S1_at11/1111+27184392..27187611NB-ARC domain containing protein, expressed
LOC_Os11g45770OsAffx.19395.1.S1_at11/1111+27188074..27188939hypothetical protein
LOC_Os11g45780OsAffx.19396.1.S1_at11/1111+27194263..27195076RGH2A, putative
LOC_Os11g45790OsAffx.31500.1.S1_at2/1111+27196967..27200406NB-ARC domain containing protein, expressed
LOC_Os11g45800NANA11+27208594..27208860hypothetical protein
LOC_Os11g45810NANA11+27210837..27211571hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009408biological_processresponse to heat
GO:0009411biological_processresponse to UV
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31500.1.S1_at--331--1991Chr11:27187059..27187083 (25 bp)
ACTGCTGTACCTCAAACTGATTGCT
LOC_Os11g45760
OsAffx.31500.1.S1_at--977--2551Chr11:27187073..27187097 (25 bp)
AACTGATTGCTGACAAGCTCGAGAA
LOC_Os11g45760
OsAffx.31500.1.S1_at--371--671Chr11:27187112..27187136 (25 bp)
ATGAAGCACTACTGAGCCTGAGACG
LOC_Os11g45760
OsAffx.31500.1.S1_at--792--1971Chr11:27187122..27187146 (25 bp)
ACTGAGCCTGAGACGCCTGTGCTTT
LOC_Os11g45760
OsAffx.31500.1.S1_at--433--2871Chr11:27187155..27187179 (25 bp)
AAGTGTGGCGTTAGCGCAGCCAAAA
LOC_Os11g45760
OsAffx.31500.1.S1_at--20--10751Chr11:27187292..27187316 (25 bp)
TTGACTCTGGAGTGACTGCGCAAAC
LOC_Os11g45760
OsAffx.31500.1.S1_at--899--2112Chr11:27187355..27187379 (25 bp)
ACAGGCCTAGAGTTTTGTTGCTCGG
LOC_Os11g45760
OsAffx.31500.1.S1_at--527--8811Chr11:27187370..27187394 (25 bp)
TGTTGCTCGGAAAGGTTGATCCAGT
LOC_Os11g45760
OsAffx.31500.1.S1_at--649--2791Chr11:27187469..27187493 (25 bp)
AAGATGGTTCAGATTCTAGCCTTAA
LOC_Os11g45760
OsAffx.31500.1.S1_at--791--10551Chr11:27187521..27187545 (25 bp)
TTCTTCGCAGCTTCAGGTGACCGGC
LOC_Os11g45760
OsAffx.31500.1.S1_at--932--3533Chr11:27187546..27187570 (25 bp)
CATCCGCATCCGGTGGTGGTAGCAG
LOC_Os11g45760
Target Sequence 
ACTGCTGTACCTCAAACTGATTGCTGACAAGCTCGAGAATTTAGAGATAAAACATGAAGCACTACTGAGCCTGAGACGCC
TGTGCTTTGTGGTGAAAAGTGTGGCGTTAGCGCAGCCAAAAATCGAGCAAGGAGCTCTACCAAACCTTGTTTCACTTCAG
CTGCTCTGTCAAGGACTAGTTGGTCTTTCCGGCATCGAGATCAGACACCTGAAAAATCTCAAGGAAGTTACGATTGACTC
TGGAGTGACTGCGCAAACAAGGCAAGATTGGGAACAAGCTGCAAAGAACCACCCTAACAGGCCTAGAGTTTTGTTGCTCG
GAAAGGTTGATCCAGTGGAAAGCGAGGAACCGGGAAGACCCTGTGCCATAAGGGGGAGGGGGAAAAGTTCTATAGGCCAA
GAAAGTTCAGAAGATGGTTCAGATTCTAGCCTTAAGAGGATGAGACTTGCAGAGCCTTCTTCTTCTTCGCAGCTTCAGGT
GACCGGCCATCCGCATCCGGTGGTGGTAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis