Browse Element(s) Details


OsAffx.31506.1.S1_at

Description tigr:9639.m04303
TID=OsAffx.31506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4615010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46130OsAffx.7425.1.S1_at11/1111+27413256..27414209RGH1A, putative
LOC_Os11g46140OsAffx.19402.1.S1_at11/1111+27421923..27424237hypothetical protein
LOC_Os11g46150OsAffx.31506.1.S1_at10/1111+27438486..27440351hypothetical protein
LOC_Os11g46160Os.14491.2.S1_x_at1/1111+27452319..27454529transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46160Os.47463.1.S1_x_at1/1111+27452319..27454529transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46170NANA11+27457406..27458972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46180NANA11+27462960..27463325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46190NANA11+27464722..27468027transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31506.1.S1_at--972--5431Chr11:27440193..27440217 (25 bp)
GAACGCTGTGCCTCCGGTGGCTGCT
LOC_Os11g46150
OsAffx.31506.1.S1_at--1010--451Chr11:27440151..27440174 (24 bp)
ATCTCTTTGCCGTCGCTGATAAGGG
LOC_Os11g46150
OsAffx.31506.1.S1_at--1160--3851Chr11:27440037..27440159 (25 bp)
CTGATAAGGGCACCCCGCTTCCGGA
LOC_Os11g46150
OsAffx.31506.1.S1_at--619--4691Chr11:27439304..27439328 (25 bp)
GCGGCACAATCGTGCGACTGTGCGA
LOC_Os11g46150
OsAffx.31506.1.S1_at--1078--7291Chr11:27439293..27439317 (25 bp)
GTGCGACTGTGCGAGAGGCTTCAAC
LOC_Os11g46150
OsAffx.31506.1.S1_at--599--911Chr11:27439278..27439302 (25 bp)
AGGCTTCAACAATTCAGGCACGCTG
LOC_Os11g46150
OsAffx.31506.1.S1_at--959--3131Chr11:27439268..27439292 (25 bp)
AATTCAGGCACGCTGTTGCTACTGC
LOC_Os11g46150
OsAffx.31506.1.S1_at--85--10731Chr11:27439253..27439277 (25 bp)
TTGCTACTGCTAGCGCCAACTTCTG
LOC_Os11g46150
OsAffx.31506.1.S1_at--73--2531Chr11:27439236..27439260 (25 bp)
AACTTCTGCACACCGTCGCTCTTGG
LOC_Os11g46150
OsAffx.31506.1.S1_at--257--3551NONE
CATCTCTCTTCGACCGTTTTTTGCC
NONE
OsAffx.31506.1.S1_at--1014--411Chr11:27438548..27438572 (25 bp)
ATCATGCGTCGAGATCACTGCGCGA
LOC_Os11g46150
Target Sequence 
GAACGCTGTGCCTCCGGTGGCTGCTGCCACCACCGCCACGGCGATCTCTTTGCCGTCGCTGATAAGGGCACCCCGCTTCC
GGAGCTCATGCTGCGGCGGCGGCACAATCGTGCGACTGTGCGAGAGGCTTCAACAATTCAGGCACGCTGTTGCTACTGCT
AGCGCCAACTTCTGCACACCGTCGCTCTTGGTCGCCGGCGCTCGGCGCAAGGCCCTCGGCACCGTTCCCATCTCTCTTCG
ACCGTTTTTTGCCCCTACGATCATGCGTCGAGATCACTGCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis