Browse Element(s) Details


OsAffx.3156.1.S1_at

Description tigr:9631.m00616
TID=OsAffx.3156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0687011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein
LOC_Os03g06840Os.18038.1.S1_at11/113+3447352..3448250GRF zinc finger family protein, expressed
LOC_Os03g06850Os.38278.2.S1_x_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.2.S1_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.1.S1_at3/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06860Os.36451.2.S1_x_at11/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06860Os.36451.1.S1_at3/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06870OsAffx.3156.1.S1_at11/113+3455682..3455939expressed protein
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3156.1.S1_at--479--4671Chr03:3455806..3455830 (25 bp)
GCGGGTGGCGGCCAATGCAGACCGC
LOC_Os03g06870
OsAffx.3156.1.S1_at--284--5571Chr03:3455767..3455791 (25 bp)
GAAAGATGCCGGTCATGCAGATCCT
LOC_Os03g06870
OsAffx.3156.1.S1_at--373--2331Chr03:3455766..3455790 (25 bp)
AAAGATGCCGGTCATGCAGATCCTA
LOC_Os03g06870
OsAffx.3156.1.S1_at--548--2791Chr03:3455765..3455789 (25 bp)
AAGATGCCGGTCATGCAGATCCTAC
LOC_Os03g06870
OsAffx.3156.1.S1_at--714--6351Chr03:3455763..3455787 (25 bp)
GATGCCGGTCATGCAGATCCTACAA
LOC_Os03g06870
OsAffx.3156.1.S1_at--555--591Chr03:3455762..3455786 (25 bp)
ATGCCGGTCATGCAGATCCTACAAG
LOC_Os03g06870
OsAffx.3156.1.S1_at--324--4491Chr03:3455760..3455784 (25 bp)
GCCGGTCATGCAGATCCTACAAGCT
LOC_Os03g06870
OsAffx.3156.1.S1_at--21--1271Chr03:3455749..3455773 (25 bp)
AGATCCTACAAGCTGTCCCAATACA
LOC_Os03g06870
OsAffx.3156.1.S1_at--341--6371Chr03:3455748..3455772 (25 bp)
GATCCTACAAGCTGTCCCAATACAG
LOC_Os03g06870
OsAffx.3156.1.S1_at--496--9851Chr03:3455743..3455767 (25 bp)
TACAAGCTGTCCCAATACAGCCGGG
LOC_Os03g06870
OsAffx.3156.1.S1_at--23--5451Chr03:3455718..3455742 (25 bp)
GAACGGGTGCAAGCAAGCCCCCAGC
LOC_Os03g06870
Target Sequence 
GCGGGTGGCGGCCAATGCAGACCGCCGGCGGCGGCGGCGGAAAGATGCCGGTCATGCAGATCCTACAAGCTGTCCCAATA
CAGCCGGGGAACGGGTGCAAGCAAGCCCCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis