Browse Element(s) Details


OsAffx.32171.2.S1_at

Description tigr:9636.m02909
TID=OsAffx.32171.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 146592 osmotin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2932011/11hypothetical protein
LOC_Os01g121507/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29290NANA8+17833596..17841001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g29300NANA8+17844718..17845371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29310OsAffx.5975.1.S1_at11/118+17851607..17853022hypothetical protein
LOC_Os08g29310Os.11380.1.S1_x_at1/118+17851607..17853022hypothetical protein
LOC_Os08g29320OsAffx.32171.2.S1_at11/118+17855432..17856104hypothetical protein
LOC_Os08g29330OsAffx.29415.1.S1_at10/118+17861094..17861608hypothetical protein
LOC_Os08g29340OsAffx.29416.1.S1_at10/118+17862857..17864777hypothetical protein
LOC_Os08g29350OsAffx.17224.1.S1_at11/118+17865710..17867344hypothetical protein
LOC_Os08g29360NANA8+17874268..17879037retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32171.2.S1_at--383--2411Chr08:17855801..17855825 (25 bp)
AAACAAGTACTTAAGGATCCTATGC
LOC_Os08g29320
OsAffx.32171.2.S1_at--155--2231Chr08:17855803..17855827 (25 bp)
ACAAGTACTTAAGGATCCTATGCAA
LOC_Os08g29320
OsAffx.32171.2.S1_at--121--2731Chr08:17855805..17855829 (25 bp)
AAGTACTTAAGGATCCTATGCAACA
LOC_Os08g29320
OsAffx.32171.2.S1_at--920--6991Chr08:17855807..17855831 (25 bp)
GTACTTAAGGATCCTATGCAACAAG
LOC_Os08g29320
OsAffx.32171.2.S1_at--257--3652Chr08:17855810..17855834 (25 bp)
CTTAAGGATCCTATGCAACAAGATT
LOC_Os08g29320
OsAffx.32171.2.S1_at--839--9773Chr08:17855812..17855836 (25 bp)
TAAGGATCCTATGCAACAAGATTAG
LOC_Os08g29320
OsAffx.32171.2.S1_at--931--2213Chr08:17855827..17855851 (25 bp)
ACAAGATTAGTGCTAACATGCCCGC
LOC_Os08g29320
OsAffx.32171.2.S1_at--21--3233Chr08:17855828..17855852 (25 bp)
CAAGATTAGTGCTAACATGCCCGCC
LOC_Os08g29320
OsAffx.32171.2.S1_at--682--2813Chr08:17855829..17855853 (25 bp)
AAGATTAGTGCTAACATGCCCGCCG
LOC_Os08g29320
OsAffx.32171.2.S1_at--733--1253Chr08:17855830..17855854 (25 bp)
AGATTAGTGCTAACATGCCCGCCGA
LOC_Os08g29320
OsAffx.32171.2.S1_at--780--6553Chr08:17855831..17855855 (25 bp)
GATTAGTGCTAACATGCCCGCCGAC
LOC_Os08g29320
Target Sequence 
AAACAAGTACTTAAGGATCCTATGCAACAAGATTAGTGCTAACATGCCCGCCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32171.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis