Browse Element(s) Details


OsAffx.32175.1.S1_at

Description tigr:9640.m04296
TID=OsAffx.32175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4362011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43610OsAffx.32173.1.S1_at11/1112+27038326..27038715hypothetical protein
LOC_Os12g43620OsAffx.32175.1.S1_at11/1112+27055096..27056542Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g43630Os.4155.1.S1_at10/1112+27061048..27065748Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os12g43640Os.40045.1.S1_at6/1112+27075526..27078938Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32175.1.S1_at--745--4491Chr12:27055578..27055602 (25 bp)
GCCGGGATACGTGCAGGACCACATA
LOC_Os12g43620
OsAffx.32175.1.S1_at--739--7331Chr12:27055588..27055612 (25 bp)
GTGCAGGACCACATAATCGCGGAGC
LOC_Os12g43620
OsAffx.32175.1.S1_at--277--971Chr12:27055592..27055616 (25 bp)
AGGACCACATAATCGCGGAGCGGCG
LOC_Os12g43620
OsAffx.32175.1.S1_at--992--7291Chr12:27056327..27056351 (25 bp)
GTGCGGGTGCAGTGCGGGAACTCGC
LOC_Os12g43620
OsAffx.32175.1.S1_at--628--971Chr12:27056385..27056409 (25 bp)
AGGAGCTCCGGCTGGGCATCACCCA
LOC_Os12g43620
OsAffx.32175.1.S1_at--464--1791Chr12:27056456..27056480 (25 bp)
ACCGCTAAGGCAAGCTCGCTCTCTA
LOC_Os12g43620
OsAffx.32175.1.S1_at--1004--2911Chr12:27056462..27056486 (25 bp)
AAGGCAAGCTCGCTCTCTAACCATC
LOC_Os12g43620
OsAffx.32175.1.S1_at--45--9531Chr12:27056475..27056499 (25 bp)
TCTCTAACCATCCTGCATTGCTTTG
LOC_Os12g43620
OsAffx.32175.1.S1_at--11--9811Chr12:27056479..27056503 (25 bp)
TAACCATCCTGCATTGCTTTGCTTA
LOC_Os12g43620
OsAffx.32175.1.S1_at--819--1731Chr12:27056481..27056505 (25 bp)
ACCATCCTGCATTGCTTTGCTTATA
LOC_Os12g43620
OsAffx.32175.1.S1_at--575--9271Chr12:27056485..27056509 (25 bp)
TCCTGCATTGCTTTGCTTATATATA
LOC_Os12g43620
Target Sequence 
GCCGGGATACGTGCAGGACCACATAATCGCGGAGCGGCGGCGGCGGGAGAAGATCAACCAGCGGTTCATCGAGCTCTCCA
CCGTCATCCCCGGCCTCAAAAAGATGGACAAGGCGACCATCCTCGGGGACGCGGTGAAGTATGTGAAGGAGTTGCAGGAG
AAGGTGAAGACGCTGGAGGAGGAGGACGGCGGCGGGCGGCCGGCGGCCATGGTGGTGAGGAAGTCGTCGTGCTCCGGCCG
GCAGTCCGCCGCCGGCGACGGCGACGGCGAAGGGCGGGTGCCGGAGATCGAGGTGCGGGTGTGGGAGAGGAGCGTGCTGG
TGCGGGTGCAGTGCGGGAACTCGCGGGGTTTGCTGGTGAGGTTGCTGTCGGAGGTGGAGGAGCTCCGGCTGGGCATCACC
CACACCAGCGTCATGCCATTCCCGGCCTCCACCGTCATCATCACCATCACCGCTAAGGCAAGCTCGCTCTCTAACCATCC
TGCATTGCTTTGCTTATATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis