Browse Element(s) Details


OsAffx.32182.1.S1_at

Description tigr:9640.m04324
TID=OsAffx.32182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4388011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43840Os.54809.1.S1_at11/1112+27179922..27185459TPR Domain containing protein, expressed
LOC_Os12g43850Os.54634.1.S1_at11/1112+27186781..27191737retrotransposon protein, putative, unclassified
LOC_Os12g43860Os.40360.1.S1_x_at1/1112+27200181..27200807hypothetical protein
LOC_Os12g43870NANA12+27205413..27205739hypothetical protein
LOC_Os12g43880OsAffx.32182.1.S1_at11/1112+27210143..27212401expressed protein
LOC_Os12g43890Os.24486.1.A1_at11/1112+27216117..27217280GNS1/SUR4 membrane family protein, putative, expressed
LOC_Os12g43900NANA12+27219001..27223042retrotransposon protein, putative, LINE subclass
LOC_Os12g43910NANA12+27223677..27224906retrotransposon protein, putative, LINE subclass
LOC_Os12g43930Os.33683.1.S1_at10/1112+27230138..27232311Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g43940Os.53453.1.S1_at10/1112+27232877..27237839TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32182.1.S1_at--809--7311Chr12:27211850..27211874 (25 bp)
GTGCTCGTCTCCGAGTCGTGCGTGC
LOC_Os12g43880
OsAffx.32182.1.S1_at--669--4671Chr12:27211892..27211916 (25 bp)
GCGGTGTACGGCTACCTGACCGCCT
LOC_Os12g43880
OsAffx.32182.1.S1_at--397--6711Chr12:27212032..27212056 (25 bp)
GTTCGAGGTGGACCGGTCGCTGGCC
LOC_Os12g43880
OsAffx.32182.1.S1_at--134--4591Chr12:27212080..27212104 (25 bp)
GTACTACCCGAGGTTCCGGGAGCTG
LOC_Os12g43880
OsAffx.32182.1.S1_at--1134--7311Chr12:27212116..27212140 (25 bp)
GTGCTACGTGGACGAGCACTACCTG
LOC_Os12g43880
OsAffx.32182.1.S1_at--537--2031Chr12:27212133..27212157 (25 bp)
ACTACCTGCCGACGGTGCTGTCCAT
LOC_Os12g43880
OsAffx.32182.1.S1_at--85--8251Chr12:27212283..27212307 (25 bp)
GGCAGAGGTGCCTGTACAACGGCCA
LOC_Os12g43880
OsAffx.32182.1.S1_at--1094--1031Chr12:27212288..27212312 (25 bp)
AGGTGCCTGTACAACGGCCAGCCGT
LOC_Os12g43880
OsAffx.32182.1.S1_at--903--1671Chr12:27212307..27212331 (25 bp)
AGCCGTCGGAGGTGTGCTTCCTCTT
LOC_Os12g43880
OsAffx.32182.1.S1_at--605--1051Chr12:27212316..27212340 (25 bp)
AGGTGTGCTTCCTCTTCGCGAGGAA
LOC_Os12g43880
OsAffx.32182.1.S1_at--1115--2811Chr12:27212339..27212363 (25 bp)
AAGTTGGCGCCAAGCGCGCTGCAGC
LOC_Os12g43880
Target Sequence 
GTGCTCGTCTCCGAGTCGTGCGTGCCGCTGCACGGCTTCCCGGCGGTGTACGGCTACCTGACCGCCTCCCGCCACAGCTT
CGTCGGCGCCTTCGACGACCCGGGCCCGCACGGCCGCGGCCGCTACAGGGCGGGGCTGGCGCCGGAGGTGTCGCCGGAGC
AGTGGCGCAAGGGCGCGCAGTGGTTCGAGGTGGACCGGTCGCTGGCCGTGTTCGTCGTCGGCGACGAGCGGTACTACCCG
AGGTTCCGGGAGCTGTGCCGGCCGCCGTGCTACGTGGACGAGCACTACCTGCCGACGGTGCTGTCCATCGAGGCGGCGGG
GCGGATCGCGAACCGGAGCGTGACGTGGGTGGACTGGTCGCGCGGCGGCGCGCACCCGGCGACGTTCGGCGGCGCGGACG
TCGGCGAGGCGTGGGTGAGGAAGGCGGCGGCGGGGCAGAGGTGCCTGTACAACGGCCAGCCGTCGGAGGTGTGCTTCCTC
TTCGCGAGGAAGTTGGCGCCAAGCGCGCTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis