Browse Element(s) Details


OsAffx.32219.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32219.1
CNT=1
FEA=DNA_80
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF63 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3455011/11ribosomal protein S15 containing protein
LOC_Os10g2134011/11NAD, putative
LOC_Os04g1672011/11ribosomal protein S15 containing protein
LOC_Os12g105809/11Ribulose bisphosphate carboxylase large chain precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34540NANA12+20884119..20885795retrotransposon protein, putative, unclassified
LOC_Os12g34550OsAffx.32219.1.S1_x_at11/1112+20895172..20897714ribosomal protein S15 containing protein
LOC_Os12g34550OsAffx.32220.1.S1_s_at11/1112+20895172..20897714ribosomal protein S15 containing protein
LOC_Os12g34560OsAffx.7787.1.S1_at11/1112+20905867..20906261hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006412biological_processprotein biosynthesis
GO:0009772biological_processphotosynthetic electron transport in photosystem II
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0045333biological_processcellular respiration
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0031225cellular_componentanchored to membrane
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0003959molecular_functionNADPH dehydrogenase activity
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32219.1.S1_x_at--345--2339Chr12:5616187..5616211 (25 bp)
AAAGTTACGGAAGGAGATCCATCAT
LOC_Os12g10580
OsAffx.32219.1.S1_x_at--204--8219Chr12:5616195..5616219 (25 bp)
GGAAGGAGATCCATCATTTTGCAAT
LOC_Os12g10580
OsAffx.32219.1.S1_x_at--678--8059Chr12:5616199..5616223 (25 bp)
GGAGATCCATCATTTTGCAATGAAA
LOC_Os12g10580
OsAffx.32219.1.S1_x_at--124--2539Chr12:5616223..5616247 (25 bp)
AACTACATAAAAAACTCTGGACAAT
LOC_Os12g10580
OsAffx.32219.1.S1_x_at--45--2437Chr10:20132700..20132724 (25 bp)
AAAACTCTGGACAATTTCGAAATCA
NONE
OsAffx.32219.1.S1_x_at--931--3116Chr10:20132712..20132736 (25 bp)
AATTTCGAAATCAGGCCAAGCGTCT
NONE
OsAffx.32219.1.S1_x_at--91--419Chr12:5616254..5616278 (25 bp)
ATCAGGCCAAGCGTCTTAATACATA
LOC_Os12g10580
OsAffx.32219.1.S1_x_at--908--4397Chr12:5616259..5616283 (25 bp)
GCCAAGCGTCTTAATACATATGCAA
LOC_Os12g10580
OsAffx.32219.1.S1_x_at--263--2419Chr12:5616284..5616308 (25 bp)
AAAAATTCATTATTGGCCCACCATT
LOC_Os12g10580
OsAffx.32219.1.S1_x_at--1060--9579Chr12:5616290..5616314 (25 bp)
TCATTATTGGCCCACCATTGATTAG
LOC_Os12g10580
OsAffx.32219.1.S1_x_at--717--10239Chr12:5616294..5616318 (25 bp)
TATTGGCCCACCATTGATTAGAAGA
LOC_Os12g10580
Target Sequence 
AAAGTTACGGAAGGAGATCCATCATTTTGCAATGAAAACTACATAAAAAACTCTGGACAATTTCGAAATCAGGCCAAGCG
TCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCATTGATTAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32219.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis