Browse Element(s) Details


OsAffx.7787.1.S1_at

Description tigr:9640.m03338
TID=OsAffx.7787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3456011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34540NANA12+20884119..20885795retrotransposon protein, putative, unclassified
LOC_Os12g34550OsAffx.32219.1.S1_x_at11/1112+20895172..20897714ribosomal protein S15 containing protein
LOC_Os12g34550OsAffx.32220.1.S1_s_at11/1112+20895172..20897714ribosomal protein S15 containing protein
LOC_Os12g34560OsAffx.7787.1.S1_at11/1112+20905867..20906261hypothetical protein
LOC_Os12g34569NANA12+20923785..20924006NA
LOC_Os12g34580NANA12+20925166..20929077retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g34590NANA12+20930581..20935361transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7787.1.S1_at--244--4551Chr12:20906060..20906230 (25 bp)
GCGCCAAATCTAGCAGGGAGCCAGG
LOC_Os12g34560
OsAffx.7787.1.S1_at--546--1691Chr12:20906042..20906066 (25 bp)
AGCCAGGGAGAGTAGTTTCCGACCA
LOC_Os12g34560
OsAffx.7787.1.S1_at--1009--6071Chr12:20906033..20906057 (25 bp)
GAGTAGTTTCCGACCAACAGCGTTG
LOC_Os12g34560
OsAffx.7787.1.S1_at--28--4371Chr12:20906020..20906044 (25 bp)
CCAACAGCGTTGGAAAGCCTTGGAT
LOC_Os12g34560
OsAffx.7787.1.S1_at--114--4451Chr12:20906004..20906028 (25 bp)
GCCTTGGATGAATCGCTTGATTTCT
LOC_Os12g34560
OsAffx.7787.1.S1_at--619--6531Chr12:20905986..20906010 (25 bp)
GATTTCTTGAAGCTAGTCGATCTGC
LOC_Os12g34560
OsAffx.7787.1.S1_at--933--7211Chr12:20905971..20905995 (25 bp)
GTCGATCTGCTGAAAAACTCCGATG
LOC_Os12g34560
OsAffx.7787.1.S1_at--269--9491Chr12:20905966..20905990 (25 bp)
TCTGCTGAAAAACTCCGATGGACTT
LOC_Os12g34560
OsAffx.7787.1.S1_at--376--10471Chr12:20905922..20905946 (25 bp)
TTACGACCTCCATCGCGATGTCTAG
LOC_Os12g34560
OsAffx.7787.1.S1_at--650--6271Chr12:20905906..20905930 (25 bp)
GATGTCTAGTTCATCGTCGCTGCTG
LOC_Os12g34560
OsAffx.7787.1.S1_at--592--3711Chr12:20905901..20905925 (25 bp)
CTAGTTCATCGTCGCTGCTGTTCTT
LOC_Os12g34560
Target Sequence 
GCGCCAAATCTAGCAGGGAGCCAGGGAGAGTAGTTTCCGACCAACAGCGTTGGAAAGCCTTGGATGAATCGCTTGATTTC
TTGAAGCTAGTCGATCTGCTGAAAAACTCCGATGGACTTGCTCCTGAACTCCAATCCCTTACGACCTCCATCGCGATGTC
TAGTTCATCGTCGCTGCTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis