Browse Element(s) Details


OsAffx.32229.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32229.1
CNT=1
FEA=DNA_30
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ndhC; NADH dehydrogenase ND3 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2201011/11NAD, putative
LOC_Os04g1770010/11kinesin heavy chain isolog, putative, expressed
LOC_Os04g244109/11kinesin heavy chain isolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21990NANA6+12716547..12720183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22000Os.57201.1.S1_at11/116+12738038..12738486expressed protein
LOC_Os06g22010OsAffx.32229.1.S1_x_at11/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.23041.1.S1_at10/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.26050.13.S1_x_at8/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.9230.1.S1_x_at1/116+12743082..12746423NAD, putative
LOC_Os06g22020OsAffx.15546.1.S1_at11/116+12750746..12752287Cytochrome P450 71C4, putative
LOC_Os06g22030Os.16446.1.S1_at11/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22030Os.40082.1.A1_x_at2/116+12757543..12762701AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32229.1.S1_x_at--145--7939Chr10:20134513..20134537 (25 bp)
GGATTTCAGCACTTTTAGCTCCGGT
NONE
OsAffx.32229.1.S1_x_at--1120--9979Chr10:20134528..20134552 (25 bp)
TAGCTCCGGTTCGTGAAGGACCAGA
NONE
OsAffx.32229.1.S1_x_at--119--7579Chr10:20134594..20134618 (25 bp)
GGGCTTGGTTACAATTCCGAATACG
NONE
OsAffx.32229.1.S1_x_at--1017--319Chr10:20134614..20134638 (25 bp)
ATACGCTATTACATGTTTGCGCTAG
NONE
OsAffx.32229.1.S1_x_at--259--759Chr10:20134626..20134650 (25 bp)
ATGTTTGCGCTAGTTTTTGTTGTTT
NONE
OsAffx.32229.1.S1_x_at--661--7638Chr10:20134655..20134679 (25 bp)
TGTGGAAACGGTCTTTCTCTACCCT
NONE
OsAffx.32229.1.S1_x_at--872--1818Chr10:20134675..20134699 (25 bp)
ACCCTTGGGCAATGAGTTTCGACGT
NONE
OsAffx.32229.1.S1_x_at--569--1199Chr10:20134689..20134713 (25 bp)
AGTTTCGACGTATTGGGTATATCCG
NONE
OsAffx.32229.1.S1_x_at--1115--10139Chr10:20134708..20134732 (25 bp)
TATCCGTTTTTATCGAAGCTTTCAT
NONE
OsAffx.32229.1.S1_x_at--369--4897Chr10:20134725..20134749 (25 bp)
GCTTTCATTTTCGTGCTTATCCTAG
NONE
OsAffx.32229.1.S1_x_at--116--4018Chr10:20134736..20134760 (25 bp)
CGTGCTTATCCTAGTTGTTGGTTTA
NONE
Target Sequence 
GGATTTCAGCACTTTTAGCTCCGGTTCGTGAAGGACCAGAGAAGCTTTCTAGTTATGAATCGGGTATAGAACCCATGGGG
GGGGCTTGGTTACAATTCCGAATACGCTATTACATGTTTGCGCTAGTTTTTGTTGTTTTTGATGTGGAAACGGTCTTTCT
CTACCCTTGGGCAATGAGTTTCGACGTATTGGGTATATCCGTTTTTATCGAAGCTTTCATTTTCGTGCTTATCCTAGTTG
TTGGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32229.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis